AT1G79080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 46001 Blast hits to 12732 proteins in 282 species: Archae - 3; Bacteria - 36; Metazoa - 518; Fungi - 600; Plants - 43410; Viruses - 0; Other Eukaryotes - 1434 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29747102..29748832 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64015.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 576 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTLLNSVLS MASPESSPRK AVGFVSHIPS GFLHFSSVSK GVARVLASTQ ITLSPKDSAF TITGSSWKPD LDSGSFSDDP RSDEPNLSDS FSHLESLVTG 101: GHKPNVAHST QLLYDLCKAN RLKKAIRVIE LMVSSGIIPD ASAYTYLVNQ LCKRGNVGYA MQLVEKMEDH GYPSNTVTYN ALVRGLCMLG SLNQSLQFVE 201: RLMQKGLAPN AFTYSFLLEA AYKERGTDEA VKLLDEIIVK GGEPNLVSYN VLLTGFCKEG RTDDAMALFR ELPAKGFKAN VVSYNILLRC LCCDGRWEEA 301: NSLLAEMDGG DRAPSVVTYN ILINSLAFHG RTEQALQVLK EMSKGNHQFR VTATSYNPVI ARLCKEGKVD LVVKCLDEMI YRRCKPNEGT YNAIGSLCEH 401: NSKVQEAFYI IQSLSNKQKC CTHDFYKSVI TSLCRKGNTF AAFQLLYEMT RCGFDPDAHT YSALIRGLCL EGMFTGAMEV LSIMEESENC KPTVDNFNAM 501: ILGLCKIRRT DLAMEVFEMM VEKKRMPNET TYAILVEGIA HEDELELAKE VLDELRLRKV IGQNAVDRIV MQFNLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)