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AT2G20400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb-like HTH transcriptional regulator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: phosphate starvation response 1 (TAIR:AT4G28610.1); Has 1676 Blast hits to 1665 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1651; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX42eggNOG:ENOG41104BEEMBL:AK118313EMBL:BT006119
EMBL:CP002685EnsemblPlants:AT2G20400EnsemblPlants:AT2G20400.1entrez:816559
Gene3D:1.10.10.60GeneID:816559GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009555
Gramene:AT2G20400.1hmmpanther:PTHR31314hmmpanther:PTHR31314:SF5HOGENOM:HOG000064669
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
InterPro:IPR025756KEGG:ath:AT2G20400OMA:AKGRMRWPfam:PF00249
Pfam:PF14379Pfscan:PS51294PhylomeDB:Q8GXC2PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_179630.2SMR:Q8GXC2STRING:3702.AT2G20400.1
SUPFAM:SSF46689TAIR:AT2G20400TIGRfam:TIGR01557TIGRFAMs:TIGR01557
UniGene:At.43867UniProt:Q8GXC2
Coordinates (TAIR10) chr2:+:8799624..8801621
Molecular Weight (calculated) 44114.70 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.74
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPNDDDDAN SMKNYPLNDD DANSMKNYPL NDDDANSMEN YPLRSIPTEL SHTCSLIPPS LPNPSEAAAD MSFNSELNQI MARPCDMLPA NGGAVGHNPF
101: LEPGFNCPET TDWIPSPLPH IYFPSGSPNL IMEDGVIDEI HKQSDLPLWY DDLITTDEDP LMSSILGDLL LDTNFNSASK VQQPSMQSQI QQPQAVLQQP
201: SSCVELRPLD RTVSSNSNNN SNSNNAAAAA KGRMRWTPEL HEVFVDAVNQ LGGSNEATPK GVLKHMKVEG LTIFHVKSHL QKYRTAKYIP VPSEGSPEAR
301: LTPLEQITSD DTKRGIDITE TLRIQMEHQK KLHEQLESLR TMQLRIEEQG KALLMMIEKQ NMGFGGPEQG EKTSAKTPEN GSEESESPRP KRPRNEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)