AT3G22430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7953455..7957605 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57073.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.29 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||
| Length | 510 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGSNNNAKS STNKPPATSI PTAAASSSQN HKPRVNSTNN DGGISNNNNN NKKESKPMMI GVQKTADKKP LKPNPSPKLA PIPKQSNPNH QNQTGPSSSR 101: PMAPFPFPDS SPALGPPPQP TYGFHMLERR TIVLADGSVR SYFALPPNYM DFPPQSRLAG PVFGRFPPFY PEEFRDQRMK RKYPGEEEID RRDERAEMMR 201: QRQQFMQYAN PNDHSFMAGT SRDVGEDVRA AKHMRVGSSR HDNGGFQVDQ VALKKSFLGF VKRVFEDPME KKNYLENGRK GRLQCLVCGR SSKDVQDTHS 301: LVMHTYCSDD SSSRVHHLGL HKALCVLMGW NFSKAPDNSK AYQNLPADEA AINQAQLIIW PPHVIVQNTS TGKGKEGRME GFGNKTMDNR IRELGLTGGK 401: SKSLYGREGH LGITLFKFAG DDSGLRDAMR MAEYFEKINR GRKSWGRVQP LTPSKDDEKN PGLVEVDGRT GEKKRIFYGY LATVTDLDKV DVETKKKTTI 501: ESLRELTRTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)