AT2G20400.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : myb-like HTH transcriptional regulator family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: phosphate starvation response 1 (TAIR:AT4G28610.1); Has 1676 Blast hits to 1665 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1651; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:8799624..8801621 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44114.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 397 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPNDDDDAN SMKNYPLNDD DANSMKNYPL NDDDANSMEN YPLRSIPTEL SHTCSLIPPS LPNPSEAAAD MSFNSELNQI MARPCDMLPA NGGAVGHNPF 101: LEPGFNCPET TDWIPSPLPH IYFPSGSPNL IMEDGVIDEI HKQSDLPLWY DDLITTDEDP LMSSILGDLL LDTNFNSASK VQQPSMQSQI QQPQAVLQQP 201: SSCVELRPLD RTVSSNSNNN SNSNNAAAAA KGRMRWTPEL HEVFVDAVNQ LGGSNEATPK GVLKHMKVEG LTIFHVKSHL QKYRTAKYIP VPSEGSPEAR 301: LTPLEQITSD DTKRGIDITE TLRIQMEHQK KLHEQLESLR TMQLRIEEQG KALLMMIEKQ NMGFGGPEQG EKTSAKTPEN GSEESESPRP KRPRNEE |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)