AT2G18540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8042382..8045008 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84774.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.26 | ||||||||||||||||||||||||||||||||||||
| Length | 707 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRFRILPLS IFLCFVSLFF CTESFTHQNG VVPSFDPSYS SPLLVKKDQR TSVVATEFGN ISAVQIGDGY HIQFITLEPN ALLLPLLLHS DMVFFVHTGT 101: GILNWIDEES ERKLELRRGD VFRLRSGTVF YVHSNEKLRV YAIFNVGKCL NDPCLGAYSS VRDLLLGFDD RTLRSAFAVP EDILRKIRDA TKPPLIVNAL 201: PRNRTQGLEE DKWQSRLVRL FVSVEDVTDH LAMKPIVDTN KKKSRTFNVF EEDPDFENNN GRSIVVDEKD LDALKGSRFG VFMVNLTKGS MIGPHWNPSA 301: CEISIVLEGE GMVRVVNQQS LSSCKNDRKS ESFMVEEGDV FVVPKFHPMA QMSFENSSFV FMGFSTSAKT NHPQFLVGQS SVLKVLDRDV VAVSFNLSNE 401: TIKGLLKAQK ESVIFECASC AEGELSKLMR EIEERKRREE EEIERRRKEE EEARKREEAK RREEEEAKRR EEEETERKKR EEEEARKREE ERKREEEEAK 501: RREEERKKRE EEAEQARKRE EEREKEEEMA KKREEERQRK EREEVERKRR EEQERKRREE EARKREEERK REEEMAKRRE QERQRKEREE VERKIREEQE 601: RKREEEMAKR REQERQKKER EEMERKKREE EARKREEEMA KIREEERQRK EREDVERKRR EEEAMRREEE RKREEEAAKR AEEERRKKEE EEEKRRWPPQ 701: PKPPEEI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)