suba logo
AT2G04050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: stem, leaf whorl, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04070.1); Has 9243 Blast hits to 9147 proteins in 1877 species: Archae - 201; Bacteria - 6287; Metazoa - 147; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink).
Protein Annotations
BioGrid:340eggNOG:COG0534eggNOG:KOG1347EMBL:AC007178
EMBL:CP002685EnsemblPlants:AT2G04050EnsemblPlants:AT2G04050.1entrez:814939
GeneID:814939Genevisible:Q9SIA4GO:GO:0015238GO:GO:0015297
GO:GO:0016021Gramene:AT2G04050.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF87
HOGENOM:HOG000177026InParanoid:Q9SIA4InterPro:IPR002528KEGG:ath:AT2G04050
KO:K03327ncoils:CoilOMA:FAHAFFIPaxDb:Q9SIA4
Pfam:PF01554Pfam:Q9SIA4PhylomeDB:Q9SIA4PIR:B84454
PRIDE:Q9SIA4PRO:PR:Q9SIA4ProteinModelPortal:Q9SIA4Proteomes:UP000006548
RefSeq:NP_178492.1SMR:Q9SIA4STRING:3702.AT2G04050.1TAIR:AT2G04050
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.49328
UniProt:Q9SIA4
Coordinates (TAIR10) chr2:-:1337386..1339270
Molecular Weight (calculated) 51471.30 Da
IEP (calculated) 7.89
GRAVY (calculated) 0.73
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEPFLLQDE HLVPCKDTWK SGQVTVELKK VSSLAAPMAA VTIAQYLLPV ISVMVAGHNG ELQLSGVALA TSFTNVSGFS ILFGLAGALE TLCGQAYGAK
101: QYEKIGTYTY SATASNIPIC VLISVLWIYI EKLLISLGQD PDISRVAGSY ALWLIPALFA HAFFIPLTRF LLAQGLVLPL LYCTLTTLLF HIPVCWAFVY
201: AFGLGSNGAA MAISVSFWFY VVILSCYVRY SSSCDKTRVF VSSDFVSCIK QFFHFGVPSA AMVCLEWWLF ELLILCSGLL PNPKLETSVL SICLTTASLH
301: YVIPGGVAAA VSTRVSNKLG AGIPQVARVS VLAGLCLWLV ESAFFSTLLF TCRNIIGYAF SNSKEVVDYV ANLTPLLCLS FILDGFTAVL NGVARGSGWQ
401: HIGALNNVVA YYLVGAPVGV YLAFNRELNG KGLWCGVVVG SAVQAIILAF VTASINWKEQ AEKARKRMVS SENRLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)