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AT1G70750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23995081 (2013): endoplasmic reticulum endoplasmic reticulum membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF593
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT5G16720.1); Has 8718 Blast hits to 6591 proteins in 581 species: Archae - 113; Bacteria - 587; Metazoa - 3699; Fungi - 664; Plants - 753; Viruses - 66; Other Eukaryotes - 2836 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG13eggNOG:ENOG410YA8UEMBL:AC011663EMBL:AK228916EMBL:CP002684EnsemblPlants:AT1G70750EnsemblPlants:AT1G70750.1
entrez:843412GeneID:843412Genevisible:Q9CAC4GO:GO:0016021GO:GO:0017022GO:GO:0030133Gramene:AT1G70750.1
hmmpanther:PTHR31448HOGENOM:HOG000152236InterPro:IPR007656iPTMnet:Q9CAC4KEGG:ath:AT1G70750ncoils:CoilOMA:CETHANE
PaxDb:Q9CAC4Pfam:PF04576Pfam:Q9CAC4PhylomeDB:Q9CAC4PIR:A96732PRIDE:Q9CAC4PRO:PR:Q9CAC4
PROSITE:PS51775ProteinModelPortal:Q9CAC4Proteomes:UP000006548RefSeq:NP_564999.2TAIR:AT1G70750TMHMM:TMhelixUniGene:At.10957
UniProt:Q9CAC4
Coordinates (TAIR10) chr1:-:26680728..26683147
Molecular Weight (calculated) 86175.80 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.71
Length 749 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANKFATLI HRKTNRITLI LVYAFLEWSL IFFILLNSLF SYFILRFADY FGLKRPCLFC SRLDRFFDAS GKSPSHRDLL CDDHALQLHS KPVEESNCGF
101: GEFHNDLVHR GCCVEKISSS LCAPIESDFG NLDYPIGDEG QIYNGLKFPR SIFVFEEEKV GSVNLNDSQE ETEEKKVPQS HEKLEDDDVD EEFSCYVSSF
201: DCKNKEIATE KEEENRVDLP IEVETAESAP KNLEFYIDEE DCHLIPVEFY KPSEEVREIS DINGDFILDF GVEHDFTAAA ETEEISDFAS PGESKPEDAE
301: TNLVASEMEN DDEETDAEVS IGTEIPDHEQ IGDIPSHQLI PHHDDDDHEE ETLEFKTVTI ETKMPVLNIN EERILEAQGS MESSHSSLHN AMFHLEQRVS
401: VDGIECPEGV LTVDKLKFEL QEERKALHAL YEELEVERNA SAVAASETMA MINRLHEEKA AMQMEALQYQ RMMEEQAEFD QEALQLLNEL MVNREKENAE
501: LEKELEVYRK RMEEYEAKEK MGMLRRRLRD SSVDSYRNNG DSDENSNGEL QFKNVEGVTD WKYRENEMEN TPVDVVLRLD ECLDDYDGER LSILGRLKFL
601: EEKLTDLNNE EDDEEEAKTF ESNGSINGNE HIHGKETNGK HRVIKSKRLL PLFDAVDGEM ENGLSNGNHH ENGFDDSEKG ENVTIEEEVD ELYERLEALE
701: ADREFLRHCV GSLKKGDKGV HLLHEILQHL RDLRNIDLTR VRENGDMSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)