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AT2G15760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1645)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1645); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT2G26530.2); Has 171 Blast hits to 167 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZFXeggNOG:ENOG410YKJ8EMBL:AC006248EMBL:AC006438
EMBL:AF345343EMBL:AY088268EMBL:BT026445EMBL:CP002685
EnsemblPlants:AT2G15760EnsemblPlants:AT2G15760.1entrez:816070GeneID:816070
GO:GO:0005886Gramene:AT2G15760.1hmmpanther:PTHR33095hmmpanther:PTHR33095:SF11
HOGENOM:HOG000114711InterPro:IPR012442KEGG:ath:AT2G15760OMA:PTRFGNN
Pfam:PF07816PhylomeDB:Q9ZQD8PIR:A84533Proteomes:UP000006548
RefSeq:NP_565379.1TAIR:AT2G15760UniGene:At.13860UniProt:Q9ZQD8
Coordinates (TAIR10) chr2:-:6865807..6866754
Molecular Weight (calculated) 35054.60 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.77
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIEVAEAAA AELNFDSTTS SPYITAPSSP TRFGNNFFSA PTSPSPSTSS NIPFDWDDQP RTPKKRSAIG FEDDFEFNFS GQLEKTSFSA ADELFDGGKI
101: RPLRTPLTPT VSSPRSRGLE IEDSDDQKDR GRDRSPGSSS SRYDRKGSRS MSPLRVSDIM VDEEEEVQST KMVASNTSNQ KSSVFLSAIL FPGRAYKKWK
201: LKDLLLFRSA SDGRPIPTKE SLNRYDILTK KDAEEVRNSS IRSRESCESS VSRSRRRNGA VVSAHEMHYT ENRAVSEELK RKTFLPYKQG WLGCLGFNPA
301: VNEIARVGSL SRASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)