AT1G63810.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:23669690..23675542 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120157.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||
| Length | 1053 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEADTKTDSR TLKVNDLLKD ARLDYDSLRK LVDDTVSSIK EAIDGIPEKF QVTSELAPSF VEDIGADKEV EFSFKKPNGF NLCGSYSICG MAKPDTSVDL 0101: LVHLPKECFY EKDYMNHRYH AKRCLYLCVI EKHLLSSSSI EKVVWSTLHN EARKPVLVVF PAKKLDQFPG FSIRLIPSAT SLFSVAKLSI SRNNVRSVTA 0201: DGVPEPTPTY NSSILEDMFL EENSEFLKKT FSEWKELSDA LILLKIWARQ RSSIYVHDCL NGFLISVILS YLATHSKINK ALSALDIFRV TLDFIATSKL 0301: WERGLYLPPQ SEIRVSKEEK MQFRELFPVV ICDSSTFVNL AFRMTSVGFL ELQDEASLTL KCMEKLRDGG FEEIFMTKID YPVKYDHCIR LQLKGKTAVS 0401: LSGFCLDKEC WRLYEQKVHS LLLEGLGDRA KSIRVVWRNT NQDWHVESGL SVLDREPLFI GISVSSTEKA YRTVDIGPDA ENKIEALRFR KFWGEKSDLR 0501: RFKDGRISES TVWETQQWTK HLIMKQIVEY ILKRHLSLTS DDIVQLVDQL DFSLNYGGKD PISLSGNLVQ AYEVLSKCLR EIEGIPLKVS SVQSLDSALR 0601: FTSVFPPEPH PVACEKIDSR RLQKLIPSCI PAMEVMIQLE GSGNWPMDDL AVEKTKSAFL LKIAESLQNV KGIPCTATED NVDVFIGGYA FRLRILHERG 0701: LSLVKREIGV DPVKHVSSTD KMLFIRSQHA SMINGLQGRF PVYAPVARLA KRWVSAHLFS GCLAEEAIEL LVAYLFLTPL PLGVPSSRIN GFLRFLRLLA 0801: DYEWMFYPLI VDINNDFGRN DEKEINDNFM SSRKGYEEDK QNISSAMFLA APYDKASEAW TSTSPNLLEQ KRLVAYARSS ANVLSKMVLQ EHNDSVQWEC 0901: LFRTPLNNYD AVILLHRDKL PYPRRLLFPS ELNQGKHVAR GKASRLFNPF MSPGDLKRSH EELKNKLMVD FEPTKCLLSG LQEEFGTLKP WYDHIGGDAI 1001: GLTWNKHNSK KRERDEEEEE EEESNPMEML KAVGEMGKGL VRDIYLLKPP RFV |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)