AT1G54510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NIMA-related serine/threonine kinase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NIMA-related serine/threonine kinase 1 (NEK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 2 (TAIR:AT3G04810.2); Has 126786 Blast hits to 124499 proteins in 4540 species: Archae - 112; Bacteria - 14456; Metazoa - 47155; Fungi - 12426; Plants - 31152; Viruses - 487; Other Eukaryotes - 20998 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20358603..20362006 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68840.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQYEFLEQI GKGSFGSALL VRHKHEKKKY VLKKIRLARQ TQRTRRSAHQ EMELISKMRH PFIVEYKDSW VEKACYVCIV IGYCEGGDMA QAIKKSNGVH 101: FQEEKLCKWL VQLLMGLEYL HSNHILHRDV KCSNIFLTKE QDIRLGDFGL AKILTSDDLT SSVVGTPSYM CPELLADIPY GSKSDIWSLG CCIYEMAYLK 201: PAFKAFDMQA LINKINKTIV SPLPAKYSGP FRGLVKSMLR KNPEVRPSAS DLLRHPHLQP YVLDVKLRLN NLRRKTLPPE LPSSKRIMKK AHFSEPAVTC 301: PAFGERQHRS LWNDRALNPE AEEDTASSIK CISRRISDLS IESSSKGTLI CKQVSSSACK VSKYPLAKSS VTSRRIMETG RRSDHLHPVS GGGTTSKIIP 401: SARRTSLPLT KRATNQEVAA YNPIVGILQN VKSPEYSINE PQVDKIAIFP LAPYEQDIFF TPMQRKTSSK SSSVSDRSIT KDKCTVQTHT TWQGIQLNMV 501: DNISDGSSSS DQNATAGASS HTTSSSSRRC RFDPSSYRQR ADALEGLLEF SARLLQEGRY DELNVLLKPF GPGKVSPRET AIWIAKSLKE NRDKTKMVDL 601: NVSREIPHVG LL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)