AT1G52050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G52070.1); Has 1535 Blast hits to 688 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1529; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19355106..19356748 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34647.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFIIYLFIFL SSAIIDSNGV AMAQKIEAIG GKGGKRWDDG ANDNVAKVYI RGDHEGIQYI KFDYVKDGQS FNGSVHGVSA DGFTQTFEID HLQYEQIVSV 101: EGYYDWKTGV MQALQFKTNL KTSEFIGYQK GTKFSLGVDG KVIVGFHGSA WRSLRSLGAY VKTAPTKSEL QGGITGGEYW DDGPNFDGVR KVYVTFTETH 201: IRSMNIDYDQ DGQVVTRYHG MKNGETQEFA VDFPNEYMTS VEGTYDHISE GNYLVLTSLT FKTSKGRISQ TFGLVIGTKF VLETKGNVIS GFHGRDGGSF 301: DAIGVYFSPM ISS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)