AT1G50120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18562302..18566015 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59108.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSSRFSFLG IGSSSEVNDS VGVSGSKIKP SLSVQTDKDV YRPGDSIFVT IEVANSHDNA SNPSILVEKL SFEVKGLEKL DIQWFSTQKP SPGSKGRRGE 101: HIFLDSSTPS LISNQILSPG AKMTLMVRAI LPQIIPPSYK GATLRYLYYI KSTLCGRWMA LENSQFYKDS TQDFIEVETR IPLQVWVIQK NNGLLLEEDQ 201: IDGIVPTSTI QTEIYWKEMD GDSEWTRAND AYDSGEDGYD SSRDEISSVS SYPNKSNLNR TFGSSLSLNS GPRLSMKDTS YVEERVGSSP KMMLSQLSAA 301: VVSYDSGTDV SSPHKSSNSV VPSQQPKQTN GAGASMSPGA GAREPVPSEG FTRGRSYNIR MDDQVLLRFS PKNADSTYYF SDTIGGTLTF FHEEGTRRCL 401: EVSVTLETLE TINRRFVHPS RRNSPTLTKV QSDHHEVVAD LIQTSFLFSI PTDGPMSFST PRVSVQWILR FEFLTTPKSV DLSRYEHPLL VPEREKSEWV 501: LPITVHAPPP RTSGAQNRGD KLFGLEPSWI RS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)