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AT1G30070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.765
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SGS domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SGS domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Siah interacting protein, N-terminal (InterPro:IPR015120), SGS (InterPro:IPR007699), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G30060.1); Has 315 Blast hits to 314 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 31; Plants - 77; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSB6eggNOG:KOG3260EMBL:AC022455EMBL:AK118864EMBL:AY086726EMBL:BT005421EMBL:CP002684
EnsemblPlants:AT1G30070EnsemblPlants:AT1G30070.1entrez:839886ExpressionAtlas:Q9C8R4Gene3D:2.60.40.790GeneID:839886Gramene:AT1G30070.1
hmmpanther:PTHR13164HOGENOM:HOG000238284IntAct:Q9C8R4InterPro:IPR007052InterPro:IPR007699InterPro:IPR008978InterPro:IPR015120
Pfam:PF04969Pfam:PF09032Pfscan:PS51048Pfscan:PS51203PhylomeDB:Q9C8R4PIR:F86424PROSITE:PS51048
PROSITE:PS51203Proteomes:UP000006548RefSeq:NP_564346.1SMR:Q9C8R4STRING:3702.AT1G30070.2SUPFAM:SSF140106SUPFAM:SSF49764
TAIR:AT1G30070UniGene:At.17978UniProt:Q9C8R4
Coordinates (TAIR10) chr1:-:10546794..10548072
Molecular Weight (calculated) 24821.20 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.52
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEVGLDLE ELRQLQNIAK RPRVLNLINS EISNLEKLRD SAVSSNAKPK VPVTVPAPVS SSGKPVSSSA LNYVTLGTFS WDQDNDKVKM YISLEGVDED
101: KVQAEFKPMS LDIKIHDVQG KNYRCAIPKL CKEIMPEKCK VLVKPKRIVI TMVKSSRGNW LDIHHKEDKI KPSLEKEKDP MAGIMGMMKN LYEDGDEEMK
201: KTIAKAWTDA RSGKAADPLK GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)