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AT1G28570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SGNH hydrolase-type esterase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28580.1); Has 3513 Blast hits to 3464 proteins in 231 species: Archae - 0; Bacteria - 358; Metazoa - 0; Fungi - 4; Plants - 3140; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28570-MONOMERBioCyc:ARA:GQT-2738-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKJ0EMBL:AC007508EMBL:CP002684
EnsemblPlants:AT1G28570EnsemblPlants:AT1G28570.1entrez:839757Gene3D:3.40.50.1110GeneID:839757Genevisible:Q9FXJ1GO:GO:0005576
GO:GO:0016042GO:GO:0016788hmmpanther:PTHR22835hmmpanther:PTHR22835:SF189HOGENOM:HOG000237651InParanoid:Q9FXJ1InterPro:IPR001087
InterPro:IPR013830KEGG:ath:AT1G28570OMA:GEFPLGCPaxDb:Q9FXJ1Pfam:PF00657Pfam:Q9FXJ1PhylomeDB:Q9FXJ1
PRIDE:Q9FXJ1PRO:PR:Q9FXJ1ProteinModelPortal:Q9FXJ1Proteomes:UP000006548RefSeq:NP_174179.3RefSeq:NP_973930.1STRING:3702.AT1G28570.1
SUPFAM:SSF52266TAIR:AT1G28570UniGene:At.40860UniProt:Q9FXJ1
Coordinates (TAIR10) chr1:-:10041838..10044112
Molecular Weight (calculated) 43302.90 Da
IEP (calculated) 4.78
GRAVY (calculated) 0.03
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLFMKLVS FFLILSTFCL TTVNSEPQCH NFKSIISFGD SIADTGNLLA LSDPTNLPKV AFLPYGETFF HHPTGRFSNG RLIIDFIAEF LGFPLVPPFY
101: GSQNANFEKG VNFAVGGATA LERSFLEERG IHFPYTNVSL AVQLSSFKES LPNLCVSPSD CRDMIENSLI LMGEIGGNDY NYAFFVGKNI EEIKELVPLV
201: IETISSAITE LIGMGGKTFL VPGEFPLGCS VAYLSLYQTS NIEEYDPLTG CLKWLNKFSE YHDEQLQAEL NRLQKLYPHV NIIYADYYNT LLRLAQEPAK
301: FGFISRPLPA CCALGGPFNF TLGRKRGTQV PECCDDPSKY VSWDGVHMTE AAYRLMAEGI LKGPYAIPPF DWSCLSSEIK NTQNSLMNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)