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AT1G24590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DORNROSCHEN-like
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. This gene functions in the regeneration of shoots in tissue culture, probably through transcriptional regulation of CUC1. May also be involved in activation of the cell cycle via CycD1;1.
Computational
Description (TAIR10)
DORNROSCHEN-like (DRNL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: embryo, leaf primordium, seed; EXPRESSED DURING: C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G12980.1); Has 5552 Blast hits to 5472 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5544; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:24311eggNOG:ENOG410J0QVeggNOG:ENOG4111WS3EMBL:AC000103
EMBL:AY560889EMBL:BT026073EMBL:CP002684EnsemblPlants:AT1G24590
EnsemblPlants:AT1G24590.1entrez:839073Gene3D:3.30.730.10GeneID:839073
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009733GO:GO:0009736GO:GO:0009740
GO:GO:0009873GO:GO:0009880GO:GO:0048825GO:GO:0051726
Gramene:AT1G24590.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF9HOGENOM:HOG000112400
InParanoid:Q9FYK5IntAct:Q9FYK5InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G24590OMA:DSYHHRIPaxDb:Q9FYK5Pfam:PF00847
Pfam:Q9FYK5Pfscan:PS51032PhylomeDB:Q9FYK5PRIDE:Q9FYK5
PRINTS:PR00367PRO:PR:Q9FYK5PROSITE:PS51032ProteinModelPortal:Q9FYK5
Proteomes:UP000006548RefSeq:NP_173864.1SMART:SM00380SMR:Q9FYK5
STRING:3702.AT1G24590.1SUPFAM:SSF54171TAIR:AT1G24590tair10-symbols:DRN-LIKE
tair10-symbols:DRNLtair10-symbols:ESR2tair10-symbols:SOB2UniGene:At.64842
UniProt:Q9FYK5
Coordinates (TAIR10) chr1:-:8714389..8715309
Molecular Weight (calculated) 33830.60 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.55
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAIMRLEG AEHRETNIHS LKRKPSRTSS TAPGSPGGVT TAKAASGAGA SGVSTIRYRG VRRRPWGRYA AEIRDPLSKE RRWLGTFDTA EEAACAYDCA
101: ARAMRGLKAR TNFVYPMPSL DSYHHRIFSS PPMNMFLLRD VLNSQSLSPL TTFAYPPCNL SNVNDVVHES FTNVNDVCED LSPKAKRSST IENESLISNI
201: FEPEPASSGL LQEIVQGFLP KPISQHASIP PKSNQQSVGV FPTMPESGFQ TDVRLADFHV EGNGFGQVKY HGELGWADHE NGFDSAKMQQ NGNGGMFYQY
301: CFHDDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)