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AT1G17890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.968
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GER2; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (TAIR:AT1G73250.1); Has 26865 Blast hits to 26861 proteins in 2796 species: Archae - 647; Bacteria - 15991; Metazoa - 493; Fungi - 205; Plants - 723; Viruses - 26; Other Eukaryotes - 8780 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1923-MONOMERBioCyc:ARA:GQT-1924-MONOMERBioGrid:23607BRENDA:1.1.1.271
EC:1.1.1.271eggNOG:COG0451eggNOG:KOG1431EMBL:AC034106
EMBL:AY063880EMBL:AY096364EMBL:CP002684EnsemblPlants:AT1G17890
EnsemblPlants:AT1G17890.1entrez:838368ExpressionAtlas:Q9LMU0Gene3D:3.40.50.720
GeneID:838368Genevisible:Q9LMU0GO:GO:0016853GO:GO:0042351
GO:GO:0050577GO:GO:0050662gramene_pathway:1.1.1.271gramene_pathway:PWY-66
gramene_plant_reactome:1119620gramene_plant_reactome:6876641HAMAP:MF_00956hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF246HOGENOM:HOG000168011InParanoid:Q9LMU0InterPro:IPR001509
InterPro:IPR016040InterPro:IPR028614KEGG:00051+1.1.1.271KEGG:00520+1.1.1.271
KEGG:ath:AT1G17890KO:K02377MINT:MINT-8067568OMA:RMHTAKL
PaxDb:Q9LMU0Pfam:PF01370Pfam:Q9LMU0PhylomeDB:Q9LMU0
PIR:B86314PRIDE:Q9LMU0PRO:PR:Q9LMU0ProteinModelPortal:Q9LMU0
Proteomes:UP000006548Reactome:R-ATH-6787639RefSeq:NP_564040.1SMR:Q9LMU0
STRING:3702.AT1G17890.1SUPFAM:SSF51735TAIR:AT1G17890tair10-symbols:GER2
UniGene:At.15825UniPathway:UPA00128UniProt:Q9LMU0
Coordinates (TAIR10) chr1:-:6154478..6155596
Molecular Weight (calculated) 36229.40 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.17
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNTGSEMK SGSFMLEKSA KIFVAGHRGL VGSAIVRKLQ DQGFTNLVLR THSELDLTSQ SDVESFFATE KPVYVILAAA KVGGIHANNT YPADFIGVNL
101: QIQTNVIHSA YTHGVKKLLF LGSSCIYPKF APQPIPESAL LTGPLEPTNE WYAIAKIAGI KMCQAYRLQH QWDAISGMPT NLYGQNDNFH PENSHVLPAL
201: MRRFHEAKAN NADEVVVWGS GSPLREFLHV DDLADACVFL MDQYSGFEHV NVGSGVEVTI KELAELVKEV VGFKGKLVWD TTKPDGTPRK LMDSSKLASL
301: GWTPKISLKD GLSQTYEWYL ENVVQKKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)