AT1G14820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.942 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 1699 Blast hits to 1699 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 335; Fungi - 476; Plants - 691; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:5105237..5106454 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26799.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||
| Length | 239 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFVVVVSSE KGYDKPTLMR FLVARSMDPV KAAKMFVDWQ KWRASMVPPT GFIPESEVQD ELEFRKVCLQ GPTKSGHPLV LVITSKHFAS KDPANFKKFV 101: VYALDKTIAS GNNGKEVGGE KLVAVIDLAN ITYKNLDARG LITGFQFLQS YYPERLAKCY ILHMPGFFVT VWKFVCRFLE KATQEKIVIV TDGEEQRKFE 201: EEIGADALPE EYGGRAKLTA IQDVLLPQAA PVTLTNNNV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)