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AT1G10230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1-like 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 18 (SK18); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 15 (TAIR:AT3G25650.1); Has 1421 Blast hits to 1417 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 533; Fungi - 174; Plants - 532; Viruses - 11; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
BioGrid:22802eggNOG:COG5201eggNOG:KOG1724EMBL:AC005489EMBL:AY086743EMBL:BT002822EMBL:BT004461
EMBL:CP002684EnsemblPlants:AT1G10230EnsemblPlants:AT1G10230.1entrez:837562GeneID:837562Genevisible:Q9SY65GO:GO:0005634
GO:GO:0006511GO:GO:0016567Gramene:AT1G10230.1hmmpanther:PTHR11165HOGENOM:HOG000172184InParanoid:Q9SY65IntAct:Q9SY65
InterPro:IPR001232InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT1G10230KO:K03094
PaxDb:Q9SY65Pfam:PF01466Pfam:PF03931Pfam:Q9SY65PhylomeDB:Q9SY65PIR:G86236PIRSF:PIRSF028729
PRIDE:Q9SY65PRO:PR:Q9SY65ProteinModelPortal:Q9SY65Proteomes:UP000006548RefSeq:NP_563864.1SMART:SM00512SMR:Q9SY65
STRING:3702.AT1G10230.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT1G10230tair10-symbols:ASK18tair10-symbols:SK18UniGene:At.11278
UniPathway:UPA00143UniProt:Q9SY65
Coordinates (TAIR10) chr1:+:3355600..3356151
Molecular Weight (calculated) 20659.90 Da
IEP (calculated) 3.84
GRAVY (calculated) -0.39
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSEEIVS AGESSEIEEA VASLTMSSNK ILLTSSDGES FEIDEAVARK FLIIVHMMED NCAGEAIPLE NVTGDILSKI IEYAKMHVNE PSEEDEDEEA
101: KKNLDSWDAK FMEKLDLETI FKIILAANYL NFEGLLGFAS QTVADYIKDK TPEEVREIFN IENDFTPEEE EEIRKENAWT FNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)