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AT1G08800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23995081 (2013): endoplasmic reticulum endoplasmic reticulum membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF593
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF593; INVOLVED IN: response to salt stress, N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT2G30690.1); Has 6872 Blast hits to 5400 proteins in 551 species: Archae - 62; Bacteria - 762; Metazoa - 3039; Fungi - 561; Plants - 730; Viruses - 11; Other Eukaryotes - 1707 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH3QeggNOG:ENOG410YFZHEMBL:AC003981EMBL:AK118159
EMBL:CP002684EnsemblPlants:AT1G08800EnsemblPlants:AT1G08800.1EnsemblPlants:AT1G08800.2
entrez:837402GeneID:837402Genevisible:F4HXQ7GO:GO:0016021
GO:GO:0017022GO:GO:0030133Gramene:AT1G08800.1Gramene:AT1G08800.2
hmmpanther:PTHR31448hmmpanther:PTHR31448:SF10HOGENOM:HOG000240495InterPro:IPR007656
iPTMnet:F4HXQ7KEGG:ath:AT1G08800ncoils:CoilOMA:SLMEETE
PaxDb:F4HXQ7Pfam:F4HXQ7Pfam:PF04576PIR:A86220
PIR:T00736PRIDE:F4HXQ7PRO:PR:F4HXQ7PROSITE:PS51775
ProteinModelPortal:F4HXQ7Proteomes:UP000006548RefSeq:NP_001117250.1RefSeq:NP_172357.2
STRING:3702.AT1G08800.1TAIR:AT1G08800TMHMM:TMhelixUniGene:At.43243
UniProt:F4HXQ7
Coordinates (TAIR10) chr1:-:2813578..2817078
Molecular Weight (calculated) 125435.00 Da
IEP (calculated) 4.40
GRAVY (calculated) -0.52
Length 1113 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGSRSFTRAL ALAFNEWLLM FMLFVNSIFS YVIARFADYS ELQSPCLMCS NLDHILRRTK DLKKTHWDII CSKHKSEISS LVYCHAHGKL VDVRGMCETC
0101: LFSFATTNKS NAETYRLLVG KLGEDSHFGS KSDRSKYPNC SKLTDCTCCN QLWTPQTAAT QVAEREILPK IGLLGKIRTG KQSAPKKSVS FNHLPDVGYT
0201: ELKIHSDTES EAVFSDTEPK QESSLNHLPP VGYNEPKIGL VGDVRTGKPS TPKKSVSFNH LPDVGYTELK IHSDTESEAV FSEDECVVLK DEDHKYQIVD
0301: LQTHPIITLP YDLATDKLLN FDFPLEPFVT RNDREEVQLQ ETNWRTYSSF PVLIPVNDVP ETSEKVFKEE EINSLDNLFL TSRAMKHFAA AKVKEEPIRL
0401: QDISSTPDVK ENPANASLME ETELICLSDV TATSGAMEHS EVILKEREEL IHLQDISVTP DFKENPANAS LLEETELICL NDVTSPLRAV EHSAVLLKDK
0501: VEPIRLQDGG SLTPDFMENS ANASILEETE LICVNDVTST SRTMGHSSVV LKENEEPIRF QDSSLTPDFK ENPASTFLVE ETELICLNDV TSPSRAMEHS
0601: TVFIEEKEEL VRHQNITLTQ DFMENPANSS LREETELICL NDVTSTSEVA ETPEDVLEGI ELMSIHDISL DEVSESVTTN QTSVEISKER DTDQADITSL
0701: ESEYIVVPSP NSMPENSTDN CVSDKKEMKE TSLRISSLSE MAPRDVTSHT EAALESESSS FNSMSVAAET NQYSGELLDL ADAYNIVVGN EGHYDSNGRQ
0801: QIENWMKKDT SRVSEDLKAL LTQISASRGI EFLSPRDVSP KISVNSSDQE TKNLDHDMQL LLQKRMLERN ESNLSLEGVS VTEIEGESEG DRLKRQVDYD
0901: RKLLTGLYKE LEEERSASAV ATNQAMAMIT RLQEEKASFQ MEALQNLRMM EEQAEYDMEA IQRLNDLLVE REKLIQDLEA EIEYFRDQTP QKKNKLDVAE
1001: KVTEMDSPSE GMSNKIQSCL VGFDEERLYI TSCLEKIENR VNGKAHDDNL PAQESVSELH ERVERLKGDL YFLEQVMNSL GHGNEGVQFV KEIASHLQTL
1101: RSLSMKRQDQ TEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)