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AT1G07360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT2G29580.1); Has 18250 Blast hits to 13471 proteins in 794 species: Archae - 12; Bacteria - 1319; Metazoa - 6997; Fungi - 3518; Plants - 3570; Viruses - 267; Other Eukaryotes - 2567 (source: NCBI BLink).
Protein Annotations
BioGrid:22489eggNOG:ENOG410XSFKeggNOG:KOG0153EMBL:AC022464
EMBL:AY054519EMBL:AY114632EMBL:CP002684EnsemblPlants:AT1G07360
EnsemblPlants:AT1G07360.1entrez:837248Gene3D:3.30.70.330GeneID:837248
Genevisible:Q9LNV5GO:GO:0000166GO:GO:0000387GO:GO:0000974
GO:GO:0003677GO:GO:0005634GO:GO:0017070GO:GO:0036002
GO:GO:0042742GO:GO:0046872GO:GO:0071006GO:GO:0071007
Gramene:AT1G07360.1hmmpanther:PTHR14089hmmpanther:PTHR14089:SF6HOGENOM:HOG000171086
InParanoid:Q9LNV5IntAct:Q9LNV5InterPro:IPR000504InterPro:IPR000571
InterPro:IPR012677InterPro:IPR032297KEGG:ath:AT1G07360KO:K12872
OMA:YTSREGAPaxDb:Q9LNV5Pfam:PF00076Pfam:PF16131
Pfam:Q9LNV5Pfscan:PS50102Pfscan:PS50103PhylomeDB:Q9LNV5
PIR:F86208PRIDE:Q9LNV5PRO:PR:Q9LNV5PROSITE:PS50102
PROSITE:PS50103ProteinModelPortal:Q9LNV5Proteomes:UP000006548RefSeq:NP_563788.1
SMART:SM00356SMART:SM00360SMR:Q9LNV5STRING:3702.AT1G07360.1
SUPFAM:SSF54928SUPFAM:SSF90229TAIR:AT1G07360UniGene:At.25418
UniProt:Q9LNV5
Coordinates (TAIR10) chr1:-:2260562..2262795
Molecular Weight (calculated) 53590.80 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.82
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHRILRDHE ADGWERSDFP IICESCLGDN PYVRMTKANY DKECKICTRP FTVFRWRPGR DARYKKTEIC QTCCKLKNVC QVCLLDLEYG LPVQVRDTAL
101: NISTHDSIPK SDVNREYFAE EHDRKARAGL DYESSFGKMR PNDTILKLQR TTPYYKRNRA HVCSFFIRGE CTRGAECPYR HEMPETGELS QQNIKDRYYG
201: VNDPVAMKLL GKAGEMGTLE SPDDESIKTL YVGGLNSRIL EQDIRDQFYA HGEIESIRIL ADKACAFVTY TSREGAEKAA QELSNRLVIN GQRLKLTWGR
301: PKPDQDGANQ QGGVAHSGLL PRAVISQQHN QPPPMQQYYM HPPPANQDKP YYPSMDPQRM GAVISTQEAG GSSTENNGAS SSSYMMPPHQ SYPPPPYGYM
401: PSPYQQQYPP NHHHQPSPMQ HYAPPPAAYP YPQQPGPGSR PAPSPTAVSA ISPDSAPAGS GAPSGSSQQA PDVSTATGSS Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)