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AT1G04730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Necessary for sister chromatid cohesion. Acts in synergy with ETG1.
Computational
Description (TAIR10)
CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP8MeggNOG:KOG1969EMBL:CP002684EnsemblPlants:AT1G04730EnsemblPlants:AT1G04730.1entrez:839431Gene3D:3.40.50.300
GeneID:839431GO:GO:0005524Gramene:AT1G04730.1hmmpanther:PTHR13779hmmpanther:PTHR13779:SF31InParanoid:F4I5S3InterPro:IPR003593
InterPro:IPR003959InterPro:IPR027417KEGG:ath:AT1G04730KO:K11269ncoils:CoilOMA:ETSVMHEPaxDb:F4I5S3
Pfam:PF00004PRIDE:F4I5S3ProteinModelPortal:F4I5S3Proteomes:UP000006548RefSeq:NP_171966.2SMART:SM00382SMR:F4I5S3
STRING:3702.AT1G04730.1SUPFAM:SSF52540TAIR:AT1G04730tair10-symbols:CTF18UniGene:At.51480UniProt:F4I5S3
Coordinates (TAIR10) chr1:-:1325385..1331086
Molecular Weight (calculated) 107026.00 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.52
Length 943 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFDIPLPEE LELLEANSHF YEEEDEYLNF EEPPYPYPID GDEEKEEERV AHKEPHVRQS ESSDIKGCKR PRSLISDPIV NLDEVSPASD KRSKIDDNRV
101: EIEDEDWLRF SPVKEVVHVM EEEEEVVIPQ ETMLSRYASE IDGECFPITA PDGGDRVYAK FCRALGDEEV NKLDVKDKSN GLIKDPISVL LQQSEKEAFN
201: KVLQASSEDQ NETISAETSV MHEKLWVDKY SPSSFTELLS DEQTNREVLL WLKQWDASVF GSEIRSTTEA VLSALKRHST TSHHQKSDSA FTRKKQFNRW
301: SKESFGYSKN AEVSNTNTAD INDLWNKKSK LTGPPEQKIL LLCGAPGLGK TTLAHIAAKH CGYRVVEINA SDERSASAIE TRILDVVQMN SVTADSRPKC
401: LVIDEIDGAL GDGKGAVDVI LKMVLAERKH ATGKENVENV KTSSKKDRRT APLSRPVICI CNDLYAPALR PLRQIAKVHI FVQPTVSRVV NRLKYICNME
501: GMKARSFALS ALAEYTECDI RSCLNTLQFL YKKKETINVI DIGSQVVGRK DMSKSLFDIW KEIFTTRKMK RERSNDASGS GAKNFDFLHS LVSSRGDYDL
601: IFDGIHENIL QLHYHDPVMD KTISCLDGLG TSDLLHRYIM RTQQMPLYVY FPSLVIPIHR RVAQIQKPMI EWPKSYHRCR TLLVEKQESL RSWHHKIPPY
701: IGRHLSIKSF VEDSISPLLH ILSPPTLRPV ASHLLSDRQK EQLAGLVMLM CSYSLTYKNV KSDPVLSSLR EDAASDALVL ALDPHLFDFI NFKGHQFKHH
801: VLALAMKQVL VHEVEKQKIL QASGGKSGIL NKPEIKKINQ DLAKKTNAAA NESQRTPVTS KPPSVSVGTA TTSKPNSSDV KKASRNALNF FDRFRKSRKD
901: YEDPEDVQNR ATAKRDSRPL LFKFNEGFTN AVKRPVRMRE FLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)