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AT1G01960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SEC7-like guanine nucleotide exchange family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).
Protein Annotations
BioGrid:24536eggNOG:COG5307eggNOG:KOG0929EMBL:AC020622EMBL:CP002684EnsemblPlants:AT1G01960EnsemblPlants:AT1G01960.1
entrez:839301Gene3D:1.10.1000.11Gene3D:1.25.10.10GeneID:839301Genevisible:Q9LPC5GO:GO:0005086GO:GO:0005634
GO:GO:0005829GO:GO:0009561GO:GO:0015031GO:GO:0016192GO:GO:0032012GO:GO:0032588GO:GO:0043547
Gramene:AT1G01960.1hmmpanther:PTHR10663hmmpanther:PTHR10663:SF42HOGENOM:HOG000181045InParanoid:Q9LPC5InterPro:IPR000904InterPro:IPR011989
InterPro:IPR015403InterPro:IPR016024InterPro:IPR023394InterPro:IPR032629InterPro:IPR032691InterPro:IPR032817iPTMnet:Q9LPC5
KEGG:ath:AT1G01960KO:K18442ncoils:CoilOMA:TLISCEHPaxDb:Q9LPC5Pfam:PF01369Pfam:PF09324
Pfam:PF12783Pfam:PF16206Pfam:PF16213Pfam:Q9LPC5Pfscan:PS50190PhylomeDB:Q9LPC5PIR:E86151
PRIDE:Q9LPC5PRO:PR:Q9LPC5ProMEX:Q9LPC5PROSITE:PS50190ProteinModelPortal:Q9LPC5Proteomes:UP000006548RefSeq:NP_171698.1
SMART:SM00222SMR:Q9LPC5STRING:3702.AT1G01960.1SUPFAM:SSF48371SUPFAM:SSF48425TAIR:AT1G01960tair10-symbols:EDA10
UniGene:At.17002UniGene:At.66839UniGene:At.69285UniProt:Q9LPC5
Coordinates (TAIR10) chr1:-:330830..337582
Molecular Weight (calculated) 194954.00 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.12
Length 1750 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASTEVDSRL GRVVIPALDK VIKNASWRKH SKLAHECKSV IERLRSPENS SPVADSESGS SIPGPLHDGG AAEYSLAESE IILSPLINAS STGVLKIVDP
0101: AVDCIQKLIA HGYVRGEADP TGGPEALLLS KLIETICKCH ELDDEGLELL VLKTLLTAVT SISLRIHGDS LLQIVRTCYG IYLGSRNVVN QATAKASLVQ
0201: MSVIVFRRME ADSSTVPIQP IVVAELMEPM DKSESDPSTT QSVQGFITKI MQDIDGVFNS ANAKGTFGGH DGAFETSLPG TANPTDLLDS TDKDMLDAKY
0301: WEISMYKSAL EGRKGELADG EVEKDDDSEV QIGNKLRRDA FLVFRALCKL SMKTPPKEDP ELMRGKIVAL ELLKILLENA GAVFRTSDRF LGAIKQYLCL
0401: SLLKNSASNL MIIFQLSCSI LLSLVSRFRA GLKAEIGVFF PMIVLRVLEN VAQPDFQQKM IVLRFLDKLC VDSQILVDIF INYDCDVNSS NIFERMVNGL
0501: LKTAQGVPPG TVTTLLPPQE AAMKLEAMKC LVAVLRSMGD WVNKQLRLPD PYSAKMLEIV DRNLEEGSHP VENGKGDGGH GGFERSDSQS ELSSGNSDAL
0601: AIEQRRAYKL ELQEGISIFN QKPKKGIEFL IKANKVGDSP EEIAAFLKDA SGLNKTLIGD YLGEREDLSL KVMHAYVDSF EFQGMEFDEA IRAFLRGFRL
0701: PGEAQKIDRI MEKFAERFCK CNPKDFSSAD TAYVLAYSVI LLNTDAHNPM VKSKMTADGF IRNNRGIDDG KDLPEEYLRA LYERISRNEI KMKDDGLGPQ
0801: QKQPTNSSRL LGLDTILNIV VPRRGDDMNM ETSDDLIRHM QERFKEKARK SESVYYAASD VIILRFMVEV CWAPMLAAFS VPLDQSDDAV ITTLCLEGFH
0901: HAIHVTSVMS LKTHRDAFVT SLAKFTSLHS PADIKQKNIE AIKAIVKLAE EEGNYLQDAW EHILTCVSRF EHLHLLGEGA PPDATFFAFP QTESGNSPLA
1001: KPNSVPAIKE RAPGKLQYAA SAMIRGSYDG SGVAGKASNT VTSEQMNNLI SNLNLLEQVG DMSRIFTRSQ RLNSEAIIDF VKALCKVSMD ELRSPSDPRV
1101: FSLTKIVEIA HYNMNRIRLV WSSIWHVLSD FFVTIGCSDN LSIAIFAMDS LRQLSMKFLE REELANYNFQ NEFMKPFVVV MRKSGAVEIR ELIIRCVSQM
1201: VLSRVDNVKS GWKSMFMIFT TAAHDAHKNI VFLSFEMVEK IIRDYFPHIT ETETTTFTDC VNCLVAFTNC KFEKDISLQA IAFLQYCARK LAEGYVGSSL
1301: RRNPPLSPQG GKIGKQDSGK FLESDEHLYS WFPLLAGLSE LSFDPRAEIR KVALKVLFDT LRNHGDHFSL ALWERVFESV LFRIFDYVRQ DVDPSEDDST
1401: DQRGYNGEVD QESWLYETCS LALQLVVDLF VNFYKTVNPL LKKVLMLFVS LIKRPHQSLA GAGIAALVRL MRDVGHQFSN EQWLEVVSCI KEAADATSPD
1501: FSYVTSEDLM EDVSNEDETN DNSNDALRRR NRQLHAVVTD AKSKASIQIF VIQAVTDIYD MYRMSLTANH MLMLFDAMHG IGSNAHKINA DLLLRSKLQE
1601: LGSSLESQEA PLLRLENESF QTCMTFLDNL ISDQPVGYNE AEIESHLISL CREVLEFYIN ISCSKEQSSR WAVPSGSGKK KELTARAPLV VAAIQTLGNM
1701: GESLFKKNLP ELFPLIATLI SCEHGSGEVQ VALSDMLQTS MGPVLLRSCC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)