suba logo
AT5G66610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.571
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DA1-related protein 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DA1-related protein 7 (DAR7); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 6 (TAIR:AT5G66620.1); Has 2467 Blast hits to 1764 proteins in 148 species: Archae - 0; Bacteria - 16; Metazoa - 1946; Fungi - 65; Plants - 174; Viruses - 2; Other Eukaryotes - 264 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRD4eggNOG:KOG1703EMBL:AB013389EMBL:AK229177
EMBL:CP002688EnsemblPlants:AT5G66610EnsemblPlants:AT5G66610.1entrez:836793
ExpressionAtlas:Q9FJX9Gene3D:2.10.110.10GeneID:836793Genevisible:Q9FJX9
GO:GO:0008270GO:GO:0043130hmmpanther:PTHR24209hmmpanther:PTHR24209:SF13
HOGENOM:HOG000239946InParanoid:Q9FJX9InterPro:IPR001781InterPro:IPR022087
iPTMnet:Q9FJX9PaxDb:Q9FJX9Pfam:PF00412Pfam:PF12315
Pfam:Q9FJX9Pfscan:PS50023PhylomeDB:Q9FJX9PRIDE:Q9FJX9
PRO:PR:Q9FJX9PROSITE:PS00142PROSITE:PS00478PROSITE:PS50023
ProteinModelPortal:Q9FJX9Proteomes:UP000006548RefSeq:NP_201462.2scanprosite:PS00478
SMART:SM00132SMR:Q9FJX9STRING:3702.AT5G66610.2SUPFAM:SSF57716
TAIR:AT5G66610tair10-symbols:DAR7UniGene:At.28860UniProt:Q9FJX9
Coordinates (TAIR10) chr5:+:26585223..26587755
Molecular Weight (calculated) 64043.90 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.61
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MWCLSCFKPS TKHDPSEDRF EEETNIVTGI SLYEDVILRQ RRSEADQIEW AIQDSFNPQE TSRCRQREED DQIARGLQYV EETELDKSVV DEEDQQLSKI
101: VEESLKEKGK SKQFEDDQVE NDEQQALMVQ ESLYMVELSA QLEEDKNIST IPPLNEDAQL QKVIWESAKG KGQIEHFKDP VEEDGNLPRV DLNVNHPHSI
201: CDGCKSAIEY GRSVHALGVN WHPECFCCRY CDKPIAMHEF SNTKGRCHIT CYERSHPNCH VCKKKFPGRK YKEHPFWKEK YCPFHEVDGT PKCCSCERLE
301: PWGTKYVMLA DNRWLCVKCM ECAVMDTYEC QPLHFEIREF FGSLNMKVEK EFPLLLVEKE ALKKAEAQEK IDNQHGVVTR GICLSEGQIV NSVFKKPTMG
401: PNGELVSLGT EPQKVVGGCE VTAILILYGL PRLLTGYILA HEMMHAWLRL NGYRNLKLEL EEGICQVLGH MWLESQTYSS SAAASSASSS SRTPAANASK
501: KGAQSDYEKK LVEFCKDQIE TDDSPVYGVG FRKVNQMVSD SSLHKILKSI QHWTKPDSNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)