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AT5G23800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.530
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 10
Curator
Summary (TAIR10)
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
Computational
Description (TAIR10)
DOMAIN OF UNKNOWN FUNCTION 724 10 (DUF 10); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVZ5eggNOG:ENOG41105F3EMBL:AB005244EMBL:CP002688
EnsemblPlants:AT5G23800EnsemblPlants:AT5G23800.1entrez:832445GeneID:832445
Gramene:AT5G23800.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF20HOGENOM:HOG000114080
InterPro:IPR007930InterPro:IPR008395InterPro:IPR014002KEGG:ath:AT5G23800
ncoils:CoilOMA:FVERIPKPfam:PF05266Pfam:PF05641
PhylomeDB:Q9FFA0Proteomes:UP000006548RefSeq:NP_197769.1SMART:SM00743
TAIR:AT5G23800tair10-symbols:ATDUF10tair10-symbols:DUF 10UniGene:At.54962
UniProt:Q9FFA0
Coordinates (TAIR10) chr5:-:8022216..8024689
Molecular Weight (calculated) 63862.50 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.58
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRQVPSESL SLSEGCEVEI SYKNNGNESV WYKAILEAKP NSIFKEELSV RLLKDDFSTP LNELRHKVLI RPIPPTNVQA CIDIEIGTFV DADYKDAWWA
101: GFVVKVIDDD KFWVCFDSPP DIIQFDRNHL RPTLEWVDEK IYSWWIIGST RNSEFLKRLA EEPMFSPGTI VELCSKRDEG EVVWVPALVY KEFKENDEYR
201: YIVKDKPLIG RSYKSRPSKT VDLRSLRPIP PPIRVKEYRL DEYIEVYHDG IGWRQGRVVK SEGGVMGSLF QNWCTLLLEA TKKQLMFKQS DLRPLRVWED
301: GVWKTRESSL TQGSGDKTEV ETQRKTFPKK TLPRNQNGSG NDSTLENENS NRKRKREENL CSGSSVEETN ILFEKKLPVW KILESMEVFK TIPQSPHFRP
401: LAEIREDSRE MLAVGMMLTF SCLLEQVKAL QHDEARSSFI SLSNSFAELE KHGFNAQVAQ LRINKLLTLR GMQSRKMDEL KGAKKVTAEK ESVKVENERK
501: ILELQRLNEE MAKEIAQSMS CEGKILQQLD NMKLEFQATA SAPWPKWAFR ST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)