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AT5G60700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyltransferase family protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyltransferase family protein 2; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12260.1); Has 216 Blast hits to 215 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 65; Plants - 77; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
DNASU:836191eggNOG:ENOG410II62eggNOG:ENOG410Y9MHEMBL:AK117290
EMBL:CP002688EnsemblPlants:AT5G60700EnsemblPlants:AT5G60700.1entrez:836191
GeneID:836191GO:GO:0016740Gramene:AT5G60700.1hmmpanther:PTHR33604
hmmpanther:PTHR33604:SF2InterPro:IPR029044KEGG:ath:AT5G60700OMA:TKPDFAW
Proteomes:UP000006548RefSeq:NP_200878.2STRING:3702.AT5G60700.1SUPFAM:SSF53448
TAIR:AT5G60700UniGene:At.49201UniGene:At.7238UniProt:Q8GYZ9
Coordinates (TAIR10) chr5:-:24402329..24404729
Molecular Weight (calculated) 76090.80 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.21
Length 668 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPGKKMLQM LSHVAGTEKY ENSVLGSIGR ILPFRQKDFT FPSYRKFRSK EAGLYLPDPA YDITLDRILQ VDFLSSSWFL SAELVKALFI EKPFTFSTGE
101: DLHLSYQLQK YRNAGSFVLP VDPNDKETWG DSEHRLAYVS ETTVIFKNIV EVRDNQWWKA LSTGYVTQWA AMYPQKIDAL FYAHSIDEVK ALGPLLEKFR
201: GTVGKKAYIA VSGGKFCPCE DAASALRWPK VVCKERRFKI FDLEVGAILG VSNSEVPVFQ AVYSSMKGLI KIHNPSVVIT VADADPNVKK ALKMATETNS
301: NGTALVLLPR ASISKVLWMA DLRSTALPNW NKMRVSVNII TQNRAQSLLR LLRSLSNAYY LGDEISLSFN MDSKVDEETI NVVSTFDWPH GPKTLRRRII
401: QGGLIRAVSE SWYPASDDDF GLLLEDDIEV SPYYFLWIKY ALLAYHYDPQ VSFPELSSIS LYTPKIVEVV KERPKWNPTD FFKQIHPHTP YLHQLPCSWG
501: AVFFPKQWRE FYVYMNMRFT ENAKANPVQI PKSRTNGWQA SWKKFLIDMM YLRGYVSLYP NFPNQSSFST NHMEPGAHIA AKDNVVKHNK TDFEVPLLMD
601: DFRNFLPNQK LPPLSKLPSL NLFNMPVSLK GLKAAGAKLG QDVLRCNNVS EIVAVNHQTG LPARCMKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)