AT4G19180.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.748 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : GDA1/CD39 nucleoside phosphatase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT2G02970.1); Has 1352 Blast hits to 1349 proteins in 221 species: Archae - 0; Bacteria - 34; Metazoa - 590; Fungi - 302; Plants - 310; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:10485518..10487868 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81687.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 740 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFGRITELF TAASSRLPAG SQSSVPYMPT GSSPDVGTSV SDSISIGNGG RKNCLRHSAS LQDFSSYHGF DPEESILPRE AISWGQNGSS FSKEKGSVPN 101: GTNPSTRRKL IRAVMIVMCL FLFAFLVYIV SMYIYTNWSR GASRYYVVFD CGSTGTRAYV YQASINYKKD SSLPIVMKSL TEGISRKSRG RAYDRMETEP 201: GFDKLVNNRT GLKTAIKPLI QWAEKQIPKN AHRTTSLFVY ATAGVRRLRP ADSSWILGNV WSILAKSPFT CRREWVKIIS GTEEAYFGWT ALNYQTSMLG 301: ALPKKATFGA LDLGGSSLQV TFENEERTHN ETNLNLRIGS VNHHLSAYSL AGYGLNDAFD RSVVHLLKKL PNVNKSDLIE GKLEMKHPCL NSGYNGQYIC 401: SQCASSVQGG KKGKSGVSIK LVGAPNWGEC SALAKNAVNS SEWSNAKHGV DCDLQPCALP DGYPRPHGQF YAVSGFFVVY RFFNLSAEAS LDDVLEKGRE 501: FCDKAWQVAR TSVSPQPFIE QYCFRAPYIV SLLREGLYIT DKQIIIGSGS ITWTLGVALL ESGKALSSTL GLKSYETLSM KINPIALISI LILSLLLLLC 601: ALSRVSNCLP RFFRKSYLPL FRHNSTSASS VLNIPSPFRF QRWSPMSTGV KTPLSPTVRG SPRRPFSFGS SIQLMESSLY SSSSCVMHSC SSDSLGDIQY 701: DSTGSFWSSP RRSQMRLQSR RSQSREDLSS SLADSHMLKM |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)