AT5G56780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.548 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : effector of transcription2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
effector of transcription2 (ET2); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26170.1); Has 86 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22964384..22966241 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54592.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFGDGVSFA VVPTVFKRED YKRTKHDTVF SKWQVLIGSN DWEDFKNGKD GVGRYRVQNL PRKSCPGLYE LGVAVIGQEQ CRKLEPDIVL ASYLGQAESV 101: RSRLQRYGRS GAHLRNVNNL NDCETIESPV KAVTGGLFED IFSKGGSILY RWAPMGSKRE AEATEGMLLS TFDYAWNKGS NGERRQLDLL KKLGDREFMS 201: KRKSGISRML FPFLRNQVGI RIKGEKHVLK EERKLTCDVD EEKSNNFLTS ILKLTRSRPQ PVSDRFDEVD GSCSDIVCGV LLEDGGCCIR SPVKGRKRCI 301: EHKGQRVCRV SPEKQTPPKS EIFTGQDHHN HKDSDVVCGV ILPDMEPCNK RPVPGRKRCE DHKGMRINAF LFLLNQTDRE KTVKDEKPDP ESHTESIEEE 401: ALTRFCEATT KNGLPCTRSS PKGSKRCWQH KEKTSSDTSP VYFQPEAAKN VACGVKLGNG LICERSPVKG RKRCEEHKGM RIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)