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AT5G56160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.609
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55690.2); Has 2063 Blast hits to 2057 proteins in 224 species: Archae - 3; Bacteria - 0; Metazoa - 550; Fungi - 432; Plants - 748; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).
Protein Annotations
BioGrid:20959eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AB011476
EMBL:AK226714EMBL:CP002688EnsemblPlants:AT5G56160EnsemblPlants:AT5G56160.1
entrez:835715Gene3D:3.40.525.10GeneID:835715Genevisible:F4K6D3
GO:GO:0000139GO:GO:0005886GO:GO:0015031Gramene:AT5G56160.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF84HOGENOM:HOG000196557InParanoid:F4K6D3
InterPro:IPR001251InterPro:IPR011074KEGG:ath:AT5G56160ncoils:Coil
OMA:MTIAKIQPaxDb:F4K6D3Pfam:F4K6D3Pfam:PF00650
Pfscan:PS50191PRIDE:F4K6D3PRO:PR:F4K6D3PROSITE:PS50191
ProteinModelPortal:F4K6D3Proteomes:UP000006548RefSeq:NP_200427.3SMART:SM00516
SMR:F4K6D3STRING:3702.AT5G56160.1SUPFAM:SSF46938SUPFAM:SSF52087
TAIR:AT5G56160TMHMM:TMhelixUniGene:At.29403UniProt:F4K6D3
Coordinates (TAIR10) chr5:+:22732444..22735380
Molecular Weight (calculated) 66261.80 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.52
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGREQTGEK LSDSEYIEEE PRRSRIGNLK KKAFSCSTKL THPLKMRKGK RKIDFQIPLI EDVRDEKEEK LVSKLRQQLL QKDLLPPVHD DYHMLLRFLK
101: TMEFKIEKTV TAWEEMLKWR KEFGTDRIIQ DFNFKELDEV TRHYPQGYHG VDKDGRPIYI ERLGKAHPGK LMEVTTIERY LKYHVQEFER TLQEKLPACS
201: VAAKRRVTTT TTILDVEGLG MKNFTPTAAN LLATIAKVDC NYYPETLHRM FIVNAGIGFR SFLWPAAQKL LDPMTIAKIQ VLEPRSLSKL LEAIDSSQLP
301: EFLGGLCKCP NEGGCLRSNK GPWNDPEIVE LVHHMEVNNV PQTTTAPLHV RDYDSTTCTI SPKETLKEEP EPEEYYSSTG SRSSMHTCIV PPLSDKASTS
401: DGDKFITTVE SIESAQSQLL DADTENTFAN TSVREGGQIL RFGALREKIN SENIFHLVKI LLVFPLKLFV LFGFLLPGYW QRQNTVVVPD SSTNNKVLEC
501: FDRLKKMEKE FTEISRKQVK IPEANEKLLA ESLERIKSLE LDLDKTKSVL HITLTKQLQI TEQLESQDEE RRKGCCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)