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AT5G53460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADH-dependent glutamate synthase 1
Curator
Summary (TAIR10)
NADH-dependent glutamate synthase
Computational
Description (TAIR10)
NADH-dependent glutamate synthase 1 (GLT1); FUNCTIONS IN: glutamate synthase (NADH) activity; INVOLVED IN: nitrate assimilation, response to cadmium ion, glutamate biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glutamine amidotransferase, class-II (InterPro:IPR000583), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Aldolase-type TIM barrel (InterPro:IPR013785), Adrenodoxin reductase (InterPro:IPR000759), Glutamate synthase, NADH/NADPH, small subunit 1 (InterPro:IPR006005), Fumarate reductase, C-terminal (InterPro:IPR012285), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, eukaryotic (InterPro:IPR012220), NAD(P)-binding domain (InterPro:IPR016040), Alpha-helical ferredoxin (InterPro:IPR009051), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 1 (TAIR:AT5G04140.1); Has 36461 Blast hits to 36289 proteins in 2576 species: Archae - 608; Bacteria - 18616; Metazoa - 663; Fungi - 406; Plants - 546; Viruses - 0; Other Eukaryotes - 15622 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53460-MONOMERBioCyc:ARA:GQT-150-MONOMERBioCyc:ARA:GQT-151-MONOMERBioGrid:20672
BRENDA:1.4.1.14EC:1.4.1.14eggNOG:COG0067eggNOG:COG0069
eggNOG:COG0070eggNOG:COG0493eggNOG:KOG0399EMBL:AB020754
EMBL:AK222185EMBL:AK230382EMBL:AY099795EMBL:CP002688
EnsemblPlants:AT5G53460EnsemblPlants:AT5G53460.1EnsemblPlants:AT5G53460.2EnsemblPlants:AT5G53460.3
entrez:835427Gene3D:2.160.20.60Gene3D:3.20.20.70Gene3D:3.40.50.720
Gene3D:3.50.50.60Gene3D:3.60.20.10GeneID:835427Genevisible:Q9LV03
GO:GO:0005506GO:GO:0006537GO:GO:0009507GO:GO:0009536
GO:GO:0009570GO:GO:0009735GO:GO:0010181GO:GO:0016040
GO:GO:0019676GO:GO:0046686GO:GO:0048589GO:GO:0050660
GO:GO:0051538GO:GO:0097054Gramene:AT5G53460.1Gramene:AT5G53460.2
Gramene:AT5G53460.3gramene_pathway:1.4.1.14gramene_pathway:GLUGLNSYN-PWYgramene_pathway:PWY-3282
hmmpanther:PTHR11938hmmpanther:PTHR11938:SF109HOGENOM:HOG000031559InParanoid:Q9LV03
InterPro:IPR002489InterPro:IPR002932InterPro:IPR006005InterPro:IPR006982
InterPro:IPR009051InterPro:IPR012220InterPro:IPR013785InterPro:IPR016040
InterPro:IPR017932InterPro:IPR023753InterPro:IPR028261InterPro:IPR029055
KEGG:00250+1.4.1.14KEGG:00910+1.4.1.14KEGG:ath:AT5G53460KO:K00264
ncoils:CoilOMA:KEHAGVNPaxDb:Q9LV03Pfam:PF00310
Pfam:PF01493Pfam:PF01645Pfam:PF04898Pfam:PF07992
Pfam:PF14691Pfam:Q9LV03Pfscan:PS51278PhylomeDB:Q9LV03
PIRSF:PIRSF000187PRIDE:Q9LV03PRO:PR:Q9LV03PROSITE:PS51278
ProteinModelPortal:Q9LV03Proteomes:UP000006548RefSeq:NP_001190529.1RefSeq:NP_001190530.1
RefSeq:NP_200158.2STRING:3702.AT5G53460.1SUPFAM:SSF46548SUPFAM:SSF51395
SUPFAM:SSF51971SUPFAM:SSF56235SUPFAM:SSF69336TAIR:AT5G53460
tair10-symbols:GLT1TIGRfam:TIGR01317TIGRFAMs:TIGR01317UniGene:At.67093
UniGene:At.8951UniPathway:UPA00045UniPathway:UPA00634UniProt:Q9LV03
Coordinates (TAIR10) chr5:+:21700518..21709629
Molecular Weight (calculated) 241913.00 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.29
Length 2208 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSAASSSSVL HLRTNQQLLS LRSLKNSTSV ASQLAVTSGV SRRRSCTARC SVKKPVIPES PFLGTRVRRS GSETLQFWRS DGPGRSAKLR TVVKSSFSAV
0101: PEKPLGLYDP SYDKDSCGVG FVAELSGETT RKTVTDSLEM LIRMTHRGAC GCESNTGDGA GILVGLPHDF YAEAATELGF VLPSAGNYAV GMFFLPTVES
0201: RREESKNVFT KVAESLGHSV LGWRLVPTDN SGLGNSALQT EPIIAQVFLT PTTKSKADFE QQMYILRRVS MVAIRAALNL QHGAMKDFYI CSLSSRTIVY
0301: KGQLKPDQLK DYYYADLGSE RFTSYMALVH SRFSTNTFPS WDRAQPMRVL GHNGEINTLR GNVNWMRARE GLLKCNELGL SKKELKKLLP IVDVSSSDSG
0401: AFDGVLELLV RAGRSLPEAV MMMIPEAWQN DKNIDPSRKE FYEYLSALME PWDGPALISF TDGRYLGATL DRNGLRPGRF YITHSGRVIM ASEVGVVDVP
0501: PEDVMRKGRL NPGMMLLVDF EKHIVVDDDA LKQQYSLARP YGEWLKRQKI ELKDIIESVP EAERIAPSIS GVVPASNDDD SMESMGIHGL LSPLKAFGYT
0601: VEALEMLLLP MAKDGSEALG SMGNDTPLAV MSNREKLCFE YFKQMFAQVT NPPIDPIREK IVTSMECMIG PEGDLTETTE EQCHRLSLKG PLLKIEEMEA
0701: IKKMNYRGWR TKVLDITYAK ERGTKGLEET LDRICDEANE AIKEGYTLLV LSDRAFSATR VAVSSLMAVG AVHHHLVKTL ARTQVGLVVE SAEPREVHHF
0801: CTLVGFGADA ICPYLAVEAV YRLQVDGKIP PKSNGEFHSK EELVKKYYKA SNYGMMKVLA KMGISTLASY KGAQIFEALG LSSEVIQKCF AGTPSRVEGA
0901: TFEMLARDGL QLHELAFPTR GYAPGSAEAS ALTNPGNYHW RKNGEIHLND PLAIAKLQEA ARTNSVAAYK EYSKRINELN KQSNLRGLMK FKDADVKIPL
1001: DEVEPASEIV KRFCTGAMSY GSISLEAHTT LAMAMNKLGG KSNTGEGGEL PSRMEPLADG SRNPKRSSIK QIASGRFGVS SYYLTNADEL QIKMAQGAKP
1101: GEGGELPGHK VIGDIAITRN STAGVGLISP PPHHDIYSIE DLAQLIHDLK NANPGARISV KLVSEAGVGV IASGVVKGHA DHVLIAGHDG GTGASRWTGI
1201: KNAGLPWELG LAETHQTLVA NDLRGRTVLQ TDGQLKTGRD VAVAALLGAE EFGFSTAPLI TLGCIMMRKC HKNTCPVGIA TQDPVLREKF AGEPEHVINF
1301: FFMLAEEVRE IMSGLGFRTV TEMIGRADML ELDREVVKNN DKLENIDLSL LLRPAAEIRP GAAQYCVQKQ DHGLDMALDQ ELIALSKSAL EKSLPVYIET
1401: PICNVNRAVG TMLSHEVTKR YHLTGLPKDT IHIKFTGSAG QSLGAFLCPG IMLELEGDSN DYVGKGLSGG KVVVYPPKGS SFDPKENIVI GNVALYGATS
1501: GEAYFNGMAA ERFSVRNSGA KAVVEGLGDH GCEYMTGGTV VVLGKTGRNF AAGMSGGIAY VLDVDGKFNT RCNLELVDLD KVEDEEDKMT LKMMIQQHQR
1601: HTNSQLAQEV LADFENLLPK FIKVFPRDYK RVLSAMKHEE VSKQAIERAS EEADETEEKE LEEKDAFAEL KNMAAASSKE EMSGNGVAAE ARPSKVDNAV
1701: KNGGFIAYER EGVKYRDPNV RLNDWNEVME ESKPGPLLTT QSARCMDCGT PFCHQENSGC PLGNKIPEFN ELVYQNRWQE ALNRLLETNN FPEFTGRVCP
1801: APCEGSCVLG IIENPVSIKS IECAIIDKAF EEGWMVPRPP LKRTGKKVAI IGSGPAGLAA ADQLNKMGHL VTVYERSDRI GGLMMYGVPN MKTDKIDVVQ
1901: RRVDLMTKEG INFVVNANIG KDPSYSLDGL KEENDAIVLA VGSTKPRDLP VPGRDLSGVH FAMEFLHANT KSLLDSNHED GNYISAKGKK VVVIGGGDTG
2001: TDCIGTSIRH GCTNIVNLEL LPQPPSTRAP GNPWPQWPRV FRIDYGHQEA TTKFGKDPRT YEVLTKRFIG DDNGNVKGLE LVRVSWEKDE TGRFQFKEIE
2101: GSEEIIEADL VFLAMGFLGP EPTLAEKLGL ECDNRSNFKA EYGRFSTTVE GVFAAGDCRR GQSLVVWAIS EGRQAADQVD KFLTKTDDDE DAKLQQDLNQ
2201: MKHNTITN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)