AT2G41220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate synthase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glutamate synthase 2 (GLU2); FUNCTIONS IN: glutamate synthase (ferredoxin) activity; INVOLVED IN: oxidation reduction, nitrogen compound metabolic process, glutamate biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Glutamate synthase, alpha subunit, C-terminal (InterPro:IPR002489), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamate synthase, central-N (InterPro:IPR006982), Glutamate synthase, central-C (InterPro:IPR002932), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: glutamate synthase 1 (TAIR:AT5G04140.1); Has 17295 Blast hits to 17192 proteins in 1999 species: Archae - 278; Bacteria - 5572; Metazoa - 117; Fungi - 161; Plants - 174; Viruses - 0; Other Eukaryotes - 10993 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17177934..17188388 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 177762.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1629 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALQSPGATG ASSSVSRLLS SAKLSSTKTI FSVDFVRSYC ISKGTKRRNE LSGFRGYSPL LKSSLRSPFS VKAILNSDRA AGDASSSFSD LKPQVAYLED 0101: IISERGACGV GFIANLENKA THKIVNDALI ALGCMEHRGG CGSDNTSGDG SGLMTSIPWD LFNEWAEKQG IASFDRTHTG VGMLFLPRDD NIRKEAKKVI 0201: TSIFEKEGLE VLGWRDVPVE ASIVGHNAKQ TMPNTEQVFV RIVKDDKVDD VERELYICRK LIERAVASES WASELYFSSL SNQTIVYKGM LRSEVLGLFY 0301: PDLQNDLYKS PFAIYHRRFS TNTSPRWHLA QPMRFLGHNG EINTIQGNLN WMTSREASLR SPVWHGREND IRPISNPKAS DSANLDSAAE LLIRSGRTPE 0401: ESLMILVPEA YKNHPTLMIK YPEAVDFYDY YKGQMEPWDG PALVLFSDGK TVGACLDRNG LRPARYWRTS DNVVYVASEV GVLPMDESKV TMKGRLGPGM 0501: MISVDLENGQ VYENTEVKKR VASYNPYGKW VSENLRNLKP SNYLSSAILE TDETLRRQQA FGYSSEDVQM VIESMAAQGK EPTFCMGDDT PVAVLSQKPH 0601: MLYDYFKQRF AQVTNPAIDP LREGLVMSLE VNIGKRGNIL EVGPQNVSQV VLSGPVLNER ELEGLLGDPL LKSQILPTFF DIRRGIEGSL KKGLLKLCEA 0701: ADEAVRNGSQ VLVLSDRSDN PEPTRPAIPM LLAVGAVHQH LIQNGLRMSA SIIADTAQCF STHHFACLIG YGASAICPHL ALETCRQWRL SNKTVNMMRN 0801: GKMPTVTMEQ AQKNYRKAVN TGLLKVLSKM GISLFSSYCG AQIFEIYGLG NEVVEFSFRG SASQIGGLTL DELARETLTF WVRAFSEDTA KRLENFGFIQ 0901: FRPGGEYHGN NPEMSKLLHK AVREKSETAY AVYQQHLANR PITVFRDLLE FKSDRNPIPV GKVEPASSIV ERFCTGGMSL GAISRETHET IAIAMNRLGG 1001: KSNSGEGGED PIRWKPLTDV VDGYSSTLPH LKGLRNGDTA TSAIKQVASG RFGVTPTFLV NADQLEIKVA QGAKPGEGGQ LPGKKVSAYI ARLRNSKPGV 1101: PLISPPPHHD IYSIEDLAQL IFDLHQVNPK AKVSVKLVSE TGIGTVASGV AKANADIIQI SGYDGGTGAS PISSIKHAGG PWELGLAETQ KTLIGNGLRE 1201: RVIIRVDGGF KSGVDVLIAA AMGADEYGFG TLAMIATGCI MARICHTNNC PVGVASQREE LRARFPGLPG DLVNFFLYIA EEVRGILAQL GYEKLDDIIG 1301: RTDLLKARDI SLVKTHLDLS YLLSSVGLPK RSSTSIRKQE VHSNGPVLDD TLLQDPEIMD AIENEKTVHK TMSIYNVDRS VCGRIAGVIA KKYGDTGFAG 1401: QLNLTFTGSA GQSFACFLTP GMNIRLVGEA NDYVGKGMAG GEVVILPVES TGFRPEDATI VGNTCLYGAT GGLLFVRGKA GERFAVRNSL AQAVVEGTGD 1501: HCCEYMTGGC VVILGKVGRN VAAGMTGGLA YILDEDNTLL PKMNKEIVKI QRVTSPVGQT QLKSLIQAHV EKTGSSKGAM IVEEWDKYLA MFWQLVPPSE 1601: EDTPEANSDH ILKTTTGDEE QVSSTLAEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)