AT5G51850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62170.1); Has 384 Blast hits to 375 proteins in 79 species: Archae - 0; Bacteria - 14; Metazoa - 135; Fungi - 31; Plants - 92; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21079419..21081478 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66647.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||
| Length | 590 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRDCGMFDD GHGSEGGGRG GAFSSSRSKK TANGCMAAFY HLFDSHHHLT IDSPSRSKGL KLMEESLPST TYKDKEISNI PVGMRVKTDT GTKSSRLRAL 101: VTDSSTSSSE ICNSPGSKTP NLVARLMGLD LLPDKTDLNH SLSDLHTMSS HHITSHRLSK KGTRSLPVSP RISSARKSDF DIHRLSLQLN REKEFGRSRL 201: KEDQEESHSP RDYARQIVKQ IKERVVTRRV VGMDITNSVK NREARPSHEL RRDTTVSCSP RTRFSEKENK QSTSHKPNSS SSSRPEPIIQ KPKPTPVILG 301: EKQSQNRVKQ RQLKPINLCK KAETETRRPI KPSPTSDIRN RKRETFLSDS RDVKAKPLHK IKKFKKIPKS NDLENISATR PPHQQINERE RLISNEAASI 401: RSSSMHKTEK NSPQVARNHK FDDAATEINS EQDYIIRIMN LAGIKSDSQA MLDLSIFRKL EHFGDYPSGT LALGCNRRLL FDLVNEILIE TVAKRRGNYQ 501: GSELISELCS AVARYSTKCY PVPEEIALVD VKRLLEKKKK LEEEGEEIIV EIEREIIDAL VRETLSELSL NKRSNKTTSD GKLNHYVLLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)