AT5G49960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.729 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20324173..20327687 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92241.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 824 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPIHTPRRTS LFQRSKTLPT NSYRRFTSPV IPTFRYDDGD TVSYDGDDSS NLPTVPNPEE KPVPVPSQSP SQRITRLWTQ FSLTHCLKFI CSCSFTYVMF 101: LRSKVSRLEA ENIILLTRCN SSSDNNEMEE TNSRAVVFFS VIITFVLPFL LYMYLDDLSH VKNLLRRTNQ KKEDVPLKKR LAYSLDVCFS VYPYAKLLAL 201: LLATVVLIVY GGLALYAVSD CGVDEALWLS WTFVADSGSH ADRVGVGARI VSVAISAGGM LIFATMLGLI SDAISKMVDS LRKGKSEVLE SNHILILGWS 301: DKLGSLLKQL AIANKSIGGG VVVVLAERDK EEMETDIAKF EFDLMGTSVI CRSGSPLILA DLKKVSVSNA RAIIVLGSDE NADQSDARAL RVVLSLTGVK 401: EGWKGHVVVE MCDLDNEPLV KLVGGERIET VVAHDVIGRL MIQCALQPGL AQIWEDILGF ENAEFYIKKW PQLDGYCFED VLISFPNAIP CGVKVAADGK 501: IVLNPSDDYV LKEGDEILVI AEDDDTYAPG SLPEVRMCHF PKMQDPPKYP EKILFCGWRR DIDDMIKVLE ALLAPGSELW MFNEVPDQER EKKLTDAGLN 601: ISKLVNIKLV HRQGNAVIRR HLESLPLETF DSILILAEQS LENSIVHSDS RSLATLLLIR DIQSKRLPYK DAKSSALRIS GFPNCCWIRK MQQASDKSIV 701: ISEILDSRTK NLVSVSRISD YVLSNELVSM ALAMVAEDKQ INRVLKELFA EKGNELCIRP AEFYIYDQEE VCFYDIMRRA RQRQEIIIGY RLAGMEQAVI 801: NPTDKSKLTK WSLDDVFVVI ASSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)