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AT3G07990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 27
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 27 (SCPL27); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 26 (TAIR:AT2G35780.1); Has 3547 Blast hits to 3487 proteins in 342 species: Archae - 0; Bacteria - 132; Metazoa - 639; Fungi - 851; Plants - 1534; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07990-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC013483EMBL:BT015083EMBL:BT015904EMBL:CP002686
EnsemblPlants:AT3G07990EnsemblPlants:AT3G07990.1entrez:819990ESTHER:arath-SCP27
Gene3D:3.40.50.1820GeneID:819990Genevisible:Q9SFB5GO:GO:0004185
GO:GO:0005576GO:GO:0005773GO:GO:0051603Gramene:AT3G07990.1
hmmpanther:PTHR11802hmmpanther:PTHR11802:SF71HOGENOM:HOG000198295InParanoid:Q9SFB5
InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058InterPro:IPR033124
KEGG:ath:AT3G07990KO:K16297MEROPS:S10.A23OMA:PWQTCSD
PANTHER:PTHR11802PaxDb:Q9SFB5Pfam:PF00450Pfam:Q9SFB5
PhylomeDB:Q9SFB5PRIDE:Q9SFB5PRINTS:PR00724PRO:PR:Q9SFB5
PROSITE:PS00131PROSITE:PS00560ProteinModelPortal:Q9SFB5Proteomes:UP000006548
RefSeq:NP_187456.1scanprosite:PS00131scanprosite:PS00560SMR:Q9SFB5
STRING:3702.AT3G07990.1SUPFAM:SSF53474TAIR:AT3G07990tair10-symbols:SCPL27
UniGene:At.40270UniGene:At.50159UniProt:Q9SFB5
Coordinates (TAIR10) chr3:+:2552544..2554644
Molecular Weight (calculated) 52143.90 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.24
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYSFLLIIL LLTISTSCCA APSSYVEEQL RDRISNLPGQ PSNVDFRQYS GYVTVHEERG RALFYWLVES PLARDPKSRP LVLWLNGGPG CSSVAYGAAE
101: EIGPFRVGSD GKTLHSKLYA WNKLANLLFL ESPAGVGFSY SNTTSDLYTT GDQRTAEDSY IFLVNWFERF PQYKHREFYI VGESYAGHFV PQLSKLVHER
201: NKGFKNPAIN LKGFMVGNAV TDDYHDYIGT FEYWWNHGLI SDSTYHQLKT ACYSVSSQHP SMQCMVALRN AELEQGNIDP YSIFTKPCNS TVALKRFLKG
301: RYPWMSRAYD PCTERYSNVY FNRLDVQKAL HANVTRLSYP WKACSDIVGS YWDDSPLSML PIYKELITAG LKIWVFSGDT DAVVPITATR YSVDALKLAT
401: ITNWYPWYDH GKVGGWSQVY KGLTLVTVAG AGHEVPLHRP RQAFILFRSF LESKPMPMT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)