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AT1G13860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.570
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : QUASIMODO2 LIKE 1
Curator
Summary (TAIR10)
Encodes QUASIMODO2 LIKE1 (QUL1), a paralog of QUASIMODO2 (QUA2). AT1G78240 (QUA2), AT1G13860 (QUL1) and AT2G03480 (QUL2) form a clade with a possible role in plant vasculature development.
Computational
Description (TAIR10)
QUASIMODO2 LIKE 1 (QUL1); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 2 (TAIR:AT2G03480.1); Has 1203 Blast hits to 1184 proteins in 159 species: Archae - 7; Bacteria - 235; Metazoa - 0; Fungi - 10; Plants - 903; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
EC:2.1.1.-eggNOG:ENOG410IFIQeggNOG:ENOG411183REMBL:AC068197
EMBL:AK117344EMBL:AK318756EMBL:CP002684EnsemblPlants:AT1G13860
EnsemblPlants:AT1G13860.1EnsemblPlants:AT1G13860.3EnsemblPlants:AT1G13860.4entrez:837945
Gene3D:3.40.50.150GeneID:837945Genevisible:Q8GYW9GO:GO:0005774
GO:GO:0005789GO:GO:0008757GO:GO:0016021GO:GO:0032259
hmmpanther:PTHR10108hmmpanther:PTHR10108:SF817HOGENOM:HOG000238541InParanoid:Q8GYW9
InterPro:IPR004159InterPro:IPR029063KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-
KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-
KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-
KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-KEGG:00941+2.1.1.-
KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-
KEGG:ath:AT1G13860OMA:MIRNAMDPaxDb:Q8GYW9Pfam:PF03141
Pfam:Q8GYW9PhylomeDB:Q8GYW9PIR:G86271PRIDE:Q8GYW9
PRO:PR:Q8GYW9ProteinModelPortal:Q8GYW9Proteomes:UP000006548RefSeq:NP_172839.1
RefSeq:NP_849656.2RefSeq:NP_849657.1RefSeq:NP_973819.1SMR:Q8GYW9
STRING:3702.AT1G13860.1SUPFAM:SSF53335TAIR:AT1G13860tair10-symbols:QUL1
TMHMM:TMhelixUniGene:At.23360UniProt:Q8GYW9
Coordinates (TAIR10) chr1:-:4743754..4746256
Molecular Weight (calculated) 68004.90 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.21
Length 603 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVASVIGLR PRISGLLFLT LGVIALITIL VPNSDSSSTT STTRVPPSNI YSNYGRVKEQ AAVDYLDLRF FSLGVNRLKE FPLCGKERDN YVPCYNVTES
101: DRNCEFAREE ERCLVRPPRD YKIPLRWPVG RDIIWTGNVK ITKDQFLSSG TMTKRLMLLE ENQITFHSDD GLIFDGVKDY AFQIAEMIGL GSDTEFPQAG
201: IRTVLDIGCG FGSFGAHLVS LNVMPICIAE YETSGSQVQL ALERGLPAMI GNFFSKQLPY PALSFDMVHC AQCGITWDIK DAMLLLEVDR VLKPGGYFVL
301: TSPTSKAQGN SPDTKKTSIS TRVDELSKKI CWSLSGQQDE TFLWQKTADP NCYSSRSQAS IPVCKDDDSV PYYHPLVPCI SGTKSKRWIP IQNRSRASGT
401: SLSELEIHGI KPEEFDEDIQ VWRSALKNYW SLLTPLIFSD HPKRPGDEDP VPPFYMIRNA MDMNARYGNL NQALLNQGKS VWVMNVVPVK ARNTLPIILD
501: RGFTGALHDW CEPFPTYPRT YDMLHANELL THLSSERCSL MDLFLEMDRI LRPEGWVVLS DKLGVIEMAR TLAARVRWEA RVIDIQDGSD QRLLVCQKPL
601: LKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)