AT5G49470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.765 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : PAS domain-containing protein tyrosine kinase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT1G67890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:20064669..20068311 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54550.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAGDNNAAN LEGGSGDSHQ SDQGFFDAAF ADRREDAATS GADTPRGDFI QSPFGVFLRS DEKASTKPFR DSSDESDGNS VVPKTLTSKA EEWMVKKGLS 101: WPWKGNEREG LEGRRSHSVW PWVRNEQQKQ QAYQSNSNHS VKSESQACES IKASSNEPMG YWSSSVNVNS TSSSSSCGST SSSVMNKVDM DSDCLDYEIL 201: WEDLTIGEQI GQGSCGTVYH GLWFGSDVAV KVFSKQEYSE EIITSFRQEV SLMKRLRHPN VLLFMGAVTS PQRLCIVTEF LPRGSLFRLL QRNTSKLDWR 301: RRIHMASDIA RGMNYLHHCT PPIIHRDLKS SNLLVDKNWT VKVADFGLSR IKHETYLTTK TGRGTPQWMA PEVLRNEAAD EKSDVYSFGV ILWELVTEKI 401: PWESLNAMQV IGAVGFMNQR LEVPKNVDPQ WISLMESCWH SEPQDRPSFQ EIMEKLRELQ RKYTIQFQAA RAASIENSAL KEK |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)