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AT3G06620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PAS domain-containing protein tyrosine kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, catalytic domain (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT5G49470.3); Has 125703 Blast hits to 124182 proteins in 4625 species: Archae - 237; Bacteria - 14697; Metazoa - 46775; Fungi - 11283; Plants - 33084; Viruses - 499; Other Eukaryotes - 19128 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06620-MONOMEReggNOG:COG0515eggNOG:KOG0192EMBL:AC020580
EMBL:AK226600EMBL:AY091084EMBL:AY123022EMBL:CP002686
EnsemblPlants:AT3G06620EnsemblPlants:AT3G06620.1entrez:819841GeneID:819841
GO:GO:0004712GO:GO:0005524GO:GO:0006355Gramene:AT3G06620.1
hmmpanther:PTHR23257hmmpanther:PTHR23257:SF485HOGENOM:HOG000233857InterPro:IPR000014
InterPro:IPR000719InterPro:IPR001245InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013767KEGG:ath:AT3G06620ncoils:CoilOMA:NELNHIN
Pfam:PF00989Pfam:PF07714Pfscan:PS50011Pfscan:PS50112
PhylomeDB:Q9C902PRINTS:PR00109PROSITE:PS00108PROSITE:PS50011
PROSITE:PS50112Proteomes:UP000006548RefSeq:NP_187314.1scanprosite:PS00108
SMART:SM00091SMART:SM00220SMR:Q9C902STRING:3702.AT3G06620.1
SUPFAM:SSF55785SUPFAM:SSF56112TAIR:AT3G06620TIGRfam:TIGR00229
TIGRFAMs:TIGR00229UniGene:At.27678UniProt:Q9C902
Coordinates (TAIR10) chr3:-:2062833..2067138
Molecular Weight (calculated) 86059.70 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.52
Length 773 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPPAEELL KKILELEESQ EHLKQEMSRL KVSTELRQRS HSVSPHRPAR RNIGEGAPSW RKSGAASFRN ASPLRKESRI QNSMRLRSEV GGGGPSAGKF
101: TDKQYLNILQ SMAQAVHAFD LNMRIIFWNA MAEKVYGYSA AEALGENPIN VIADDRDAAF AMNIARRCVR GESWTGEFPV KSKSGDRFSA VTTCSPFYDD
201: DGALMGIICI TSNTAPYLNP RISLAKLKAQ EEGETSSIPA RNSFASKLGL DSRGAVISKL GLDSDQPIQV AIASKISDLA SKVSNKVRSK MRAGDNSATL
301: SEGGSGDSHQ KDHNVFGATL VDHRDDAASS GASTPRGDFI QSPFGVFTCN DEKFVSKPFK DSSDESDGKP AIHKVLTSKA EEWMVKKGLS WPWKGNEQEG
401: SKGRPTNSVW PWVQNEQKKE RCHQINPSAG VQYESHAFES NKPINNEASS LWSSPINANS TSSASSCGST SSSVMNKVDT DSEGLEYEIL WDDLTIGEQV
501: GQGSCGTVYH GLWFGSDVAV KVFSKQEYSA EVIESFKQEV LLMKRLRHPN VLLFMGAVTS PQRLCIVSEF LPRGSLFRLL QKSTSKLDWR RRIHMALDIA
601: RGMNYLHHCS PPIIHRDLKS SNLLVDKNWT VKVADFGLSR IKHETYLTSK SGKGTPQWMA PEVLRNESAD EKSDIYSFGV VLWELATEKI PWETLNSMQV
701: IGAVGFMDQR LEIPKDIDPR WISLMESCWH SDTKLRPTFQ ELMDKLRDLQ RKYMIQFQAT RAALSDNSLL KDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)