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AT5G47870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXB6eggNOG:ENOG410YI2TEMBL:AB016886EMBL:AK175664
EMBL:BT024916EMBL:CP002688EnsemblPlants:AT5G47870EnsemblPlants:AT5G47870.1
entrez:834838GeneID:834838GO:GO:0000724GO:GO:0009507
Gramene:AT5G47870.1hmmpanther:PTHR34050hmmpanther:PTHR34050:SF3KEGG:ath:AT5G47870
OMA:IVKSHDPPhylomeDB:Q9FIJ4Proteomes:UP000006548RefSeq:NP_199598.1
TAIR:AT5G47870UniGene:At.26615UniGene:At.63891UniProt:Q9FIJ4
Coordinates (TAIR10) chr5:-:19384555..19385808
Molecular Weight (calculated) 21410.30 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.19
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MALQVQQTSA AFTISSPSTA AARIKLSPFR TVAVNRGVRC SGGGVGGGDA GKKKAVPNSN YVVPIDKFSS SSSITRPLIE ILRDLNKKIP DNIVKSHDPP
101: STSAATSGFI PWYHANRMLS FYAPGWCGEV RDVIFSENGN VTVVYRLTIR GSDGEAHRES TGTVTTTDDH IEDPVTAAEE IAFCRACARF GLGLYLYHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)