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AT5G46160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L14p/L23e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT1G17560.1); Has 9605 Blast hits to 9605 proteins in 3255 species: Archae - 313; Bacteria - 5457; Metazoa - 343; Fungi - 288; Plants - 820; Viruses - 0; Other Eukaryotes - 2384 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0093eggNOG:KOG0901EMBL:AB006698EMBL:AF402993
EMBL:AY058844EMBL:AY093096EMBL:AY128773EMBL:CP002688
EnsemblPlants:AT5G46160EnsemblPlants:AT5G46160.1EnsemblPlants:AT5G46160.2entrez:834658
ExpressionAtlas:Q93Z17Gene3D:2.40.150.20GeneID:834658Genevisible:Q93Z17
GO:GO:0003735GO:GO:0005739GO:GO:0006412GO:GO:0015934
GO:GO:0019843HAMAP:MF_01367hmmpanther:PTHR11761hmmpanther:PTHR11761:SF12
HOGENOM:HOG000183702InParanoid:Q93Z17InterPro:IPR000218InterPro:IPR005745
InterPro:IPR019972KEGG:ath:AT5G46160KO:K02874OMA:RTRYPTQ
PANTHER:PTHR11761PaxDb:Q93Z17Pfam:PF00238Pfam:Q93Z17
PhylomeDB:Q93Z17PRIDE:Q93Z17PRO:PR:Q93Z17PROSITE:PS00049
ProteinModelPortal:Q93Z17Proteomes:UP000006548RefSeq:NP_199428.3RefSeq:NP_851140.1
scanprosite:PS00049SMART:SM01374SMR:Q93Z17STRING:3702.AT5G46160.1
SUPFAM:SSF50193TAIR:AT5G46160TIGRfam:TIGR01067TIGRFAMs:TIGR01067
UniGene:At.26651UniProt:Q93Z17
Coordinates (TAIR10) chr5:-:18711456..18712341
Molecular Weight (calculated) 18569.90 Da
IEP (calculated) 11.46
GRAVY (calculated) -0.29
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAFASRLT RGGRSLLGGL NNGGSMNSSN GMMNESILSQ QQQRRTFIQM GTVLKVVDNS GAKKVMCIQA LKGKKGARLG DTIVASVKEA MPNGKVKKGA
101: VVYGVVVRAA MQRGRVDGSE VRFDDNAVVL VDSKDKNTKT DRQPIGTRVF GPVPHELRKK KHLKILALAQ HVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)