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AT5G53070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L9/RNase H1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L9/RNase H1; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Ribosomal protein L9, N-terminal (InterPro:IPR020070), Ribosomal protein L9, C-terminal (InterPro:IPR020069); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HFBeggNOG:KOG4607EMBL:AB018116EMBL:BT002884
EMBL:BT004396EMBL:CP002688EnsemblPlants:AT5G53070EnsemblPlants:AT5G53070.1
entrez:835387Gene3D:3.10.430.100Gene3D:3.40.5.10GeneID:835387
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT5G53070.1
hmmpanther:PTHR21368hmmpanther:PTHR21368:SF21HOGENOM:HOG000006313InterPro:IPR000244
InterPro:IPR009027InterPro:IPR020069InterPro:IPR020070KEGG:ath:AT5G53070
KO:K02939ncoils:CoilOMA:KFALLIRPANTHER:PTHR21368
Pfam:PF01281Pfam:PF03948PhylomeDB:Q9LVU5Proteomes:UP000006548
RefSeq:NP_200119.1SMR:Q9LVU5STRING:3702.AT5G53070.1SUPFAM:SSF55653
SUPFAM:SSF55658TAIR:AT5G53070UniGene:At.27262UniProt:Q9LVU5
Coordinates (TAIR10) chr5:+:21518837..21520167
Molecular Weight (calculated) 25353.00 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.47
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYVGQSRNV IRHVVSRGTA YHKYENAIHH PLLFACQGVR YRKLEVILTT GIEKLGKAGE TVKVAPGYFR NHLMPKLLAV PNIDKYAYLI REQRKMYNHE
101: EVKEEVKVVH KTSEVQTKEY EKAAKRLANA NLVLRKLVDK EKFKNRSSKD DKPDVQTPIT KEEIVSEVAR QLCVKIDPDN VVLAAPLETF GEYEVPLKFP
201: KTIPLPQGTV QWILKVKVRG H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)