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AT5G42010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.970
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G64610.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AB017067EMBL:CP002688
EnsemblPlants:AT5G42010EnsemblPlants:AT5G42010.1entrez:834206Gene3D:2.130.10.10
GeneID:834206Gramene:AT5G42010.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF5
HOGENOM:HOG000239143InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G42010OMA:KKSESTC
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FHY2
PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_199016.1scanprosite:PS00678SMART:SM00320
SMR:Q9FHY2STRING:3702.AT5G42010.1SUPFAM:SSF50978TAIR:AT5G42010
UniGene:At.30194UniProt:Q9FHY2
Coordinates (TAIR10) chr5:+:16802280..16804757
Molecular Weight (calculated) 79085.40 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.47
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTRGNEEEE DWFSDAREEV SSVSDCNSEV ADDFVQATGD LDLWTMNPES VTNRRQKFFQ SMGFSFKKRD FDLDLDLLGD SSSDHIPVSK QLTSVSETDH
101: EEEEKEEKLL RNESTSSGSS VSSFSTASLA EAFSFRGSFQ NRAKNIDDQI LLTRDYSSNS SSIAEGLSES DSSRFDSYGD LPNSPMSRYE ESPKKGAKGW
201: LKKLGVLTHV LDKTEECTDG ESTRSSIRRQ LTRVQSFKKQ FKELSSLCVG QEFSAHDGSI VVMKFSHDGK YLASAGEDCV VRVWNIIEDE RRDNEFEVAE
301: SDSSCVYFGM NDKSQIEPLK TENEKIEKSR GLLRKKSEST CAVLPSKVFS ISETPQHEFR GHTGEILDLS WSEKGFLLSS SVDETVRLWR VGSSDECIRV
401: FSHKSFVTCV AFNPVDDNYF ISGSIDGKVR IWDVSQFRVV DYTDIRQIVT ALCYRPDGKG AVVGSMTGEC RFYHTTDNQL QLDRDISLHG KKKVPNKRIT
501: GFQFFPGDSD KVMVTSADSQ IRIICGVDTI CKLKKASSLR TTLMSPTFAS FTSDGKHIVS TIEESGIHVW DFSQPNKKAS SQKPKTIRSY EGFLSRNVSV
601: AIPWLGQGKE DSIIADLEKS FAHFPVPLDY FSPMKGATTW PEEKLGVVAG TAAAAVSATV SSRSKLRLLK SVCQNVHGST PHLWGLVIVT ATWDGSIRVF
701: HNYGLPIRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)