suba logo
AT4G37900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.607
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (duplicated DUF1399)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF76eggNOG:ENOG4111FEQEMBL:AL035538EMBL:AL161592
EMBL:CP002687EnsemblPlants:AT4G37900EnsemblPlants:AT4G37900.1entrez:829946
GeneID:829946Genevisible:Q9SZJ2GO:GO:0009734GO:GO:0010928
GO:GO:0071470GO:GO:2000028Gramene:AT4G37900.1hmmpanther:PTHR34365
hmmpanther:PTHR34365:SF2HOGENOM:HOG000243905InterPro:IPR009836KEGG:ath:AT4G37900
OMA:GCGAMLNPaxDb:Q9SZJ2Pfam:PF07173Pfam:Q9SZJ2
PhylomeDB:Q9SZJ2PIR:T05617PRO:PR:Q9SZJ2ProteinModelPortal:Q9SZJ2
Proteomes:UP000006548RefSeq:NP_195503.1STRING:3702.AT4G37900.1TAIR:AT4G37900
UniGene:At.43494UniProt:Q9SZJ2
Coordinates (TAIR10) chr4:-:17821737..17824445
Molecular Weight (calculated) 86606.10 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.36
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKEKEQTLE WNEAQKIDIS VDLLAAAKKH LLFLGAVDRN RCLYDGPALQ RAIYRYNAYW LPLLAQYTES SSICQGPLVP PLDCEWVWHC HRLNPVRYKT
101: DCEQFYGRVL DNSGVVSSVN GNCKSQTETL WKRLYPTEPY DLDFANAISE PADVSALEKC TTYDLVLAVK RQSPFFYQVS RAHVDNDVFL QEAVARYKAF
201: LYLIKGNRER SIKLFCVPTY DIDLIWHTHQ LHAISYCNDL TKMIGKVLEH DDTDSDRSKG KKLDTGFSGT TAQWEETFGR RYWKAGAMNR GNTPKPVTTS
301: PYVCSGKKSI AKEEESQNVI QYPEVKVIEV ILEIVGVKNL PDAHKGKVFV LFSKTQPDSL FNAERRLTVL SESCGEKQVA LFQCEPTGEL SFQLMSSKSK
401: SLGFTSLSFS EFLSPVTKLS VEKWLELTPT KRGKADDPNP ISLRVAVSFT PPTRSPTVLH LVQARPSLKG SCFLPMLRKV RLAKSFTRVV DETETEVINL
501: QMRNSNDAAP KGDRRQVIGV KECGETYVLA EYDGTFWSLL DSKWSLKQTC NPATDGPLFE LSGTRMVKVY SGRKLEYEPK HCSKLRSEQD FMTAVEFSKQ
601: HPYGKAVGLL DLKFGSIEAN EKWLVLPGMV SSFILSDLLK KEGFSAAAKD TVKANGITEE STEIDVLSQE KLEEETMMDV DTTTPVAVAA EKINGGARCF
701: SKELSGNMIE EEGGHCGGCG GCGGCGGGGG CGGGGRCGGM TKIEGCGGGS CTGGSTGCGN CGGGCGNMMK NNANGNAPSV ENDAVTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)