AT5G07530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.559 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine rich protein 17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycine rich protein 17 (GRP17); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid storage, sexual reproduction, pollen hydration; LOCATED IN: extracellular matrix, extracellular region, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine-rich protein 18 (TAIR:AT5G07520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2382678..2384495 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53196.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 543 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEELSQKPS SAQSLSLREG RNRFPFLSLS QREGRFFPSL SLSERDGRKF SFLSMFSFLM PLLEVIKIII ASVASVIFVG FACVTLAGSA AALVVSTPVF 101: IIFSPVLVPA TIATVVLATG FTAGGSFGAT ALGLIMWLVK RRMGVKPKDN PPPAGLPPNS GAGAGGAQSL IKKSKAKSKG GLKAWCKKML KSKFGGKKGK 201: SGGGKSKFGG KGGKSEGEEG MSSGDEGMSG SEGGMSGGEG GKSKSGKGKL KAKLEKKKGM SGGSESEEGM SGSEGGMSGG GGSKSKSKKS KLKAKLGKKK 301: GMSGGMSGSE EGMSGSEGGM SSGGGSKSKS KKSKLKAKLG KKKSMSGGMS GSEEGMSGSE GGMSGGGGGK SKSRKSKLKA NLGKKKCMSG GMSGSEGGMS 401: RSEGGISGGG MSGGSGSKHK IGGGKHGGLG GKFGKKRGMS GSGGGMSGSE GGVSGSEGSM SGGGMSGGSG SKHKIGGGKH GGLRGKFGKK RGMSGSEGGM 501: SGSEGGMSES GMSGSGGGKH KIGGGKHKFG GGKHGGGGGH MAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)