suba logo
AT2G03740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.641
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
late embryogenesis abundant domain-containing protein / LEA domain-containing protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT2G03850.1); Has 1140 Blast hits to 576 proteins in 184 species: Archae - 2; Bacteria - 341; Metazoa - 46; Fungi - 35; Plants - 656; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JMIFeggNOG:ENOG41116ZEEMBL:AC006836EMBL:AY087757
EMBL:BT025749EMBL:CP002685EMBL:DQ446464EnsemblPlants:AT2G03740
EnsemblPlants:AT2G03740.1entrez:814901GeneID:814901GO:GO:0009507
Gramene:AT2G03740.1hmmpanther:PTHR23241hmmpanther:PTHR23241:SF49KEGG:ath:AT2G03740
OMA:NDPKWLDPhylomeDB:Q9ZPQ7PIR:G84451Proteomes:UP000006548
RefSeq:NP_178469.1STRING:3702.AT2G03740.1TAIR:AT2G03740UniGene:At.41376
UniProt:Q9ZPQ7
Coordinates (TAIR10) chr2:-:1142941..1143917
Molecular Weight (calculated) 20017.60 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.70
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MSISGAVLSG LGPSFLISGG KRSGVGGGAM KVGRKNVIIA PQRKKSWVSA AVKGAGNSPN DPKWLDDASE KASGYVKEKG SEVGNVSAQK GQELQNQMER
101: AKDYIFGKAG EAMDSVAENA KRASDFVTEK GKEVKEETTS RTDKAKDFIV EKAGDVKDTA MDMRNKTSKY VGDKATEAKE AILPPKTDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)