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AT5G37000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.547
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G19670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:CP002688EnsemblPlants:AT5G37000
EnsemblPlants:AT5G37000.1entrez:833670GeneID:833670Gramene:AT5G37000.1
hmmpanther:PTHR11062hmmpanther:PTHR11062:SF77InParanoid:F4K5V3InterPro:IPR004263
KEGG:ath:AT5G37000OMA:NWEEFAVPaxDb:F4K5V3Pfam:PF03016
PRIDE:F4K5V3ProteinModelPortal:F4K5V3Proteomes:UP000006548RefSeq:NP_198516.1
STRING:3702.AT5G37000.1TAIR:AT5G37000TMHMM:TMhelixUniGene:At.50489
UniProt:F4K5V3
Coordinates (TAIR10) chr5:+:14618107..14620282
Molecular Weight (calculated) 62556.10 Da
IEP (calculated) 9.72
GRAVY (calculated) -0.24
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIITRFHHS DIRRLLLGII VIAGFVVLLV QCFGIPCRNS FCLSPIKVSV IELTNSNVTQ VSVMNYTNLS DDDDEELENK KEDLDSENDV VISKEKVEMN
101: VSFIAIGNIS LRNPKMVVVS SESESDPNSV MIRVKDSRKG NVLSLRRHKQ GSAISISQMN SLLIQSLSSF KSPKPRWSSA RDSEMLSARS EIEKVSLVHD
201: FLGLNPLVYR NISKFLRSGD MSRFSMCCLF RSYDLMERKL KIYVYKEGGK PIFHTPMPRG IYASEGWFMK LMESNKKFVV KDPRKAHLFY IPISIKALRS
301: SLGLDFQTPK SLADHLKEYV DLIAGKYKFW NRTGGADHFL VACHDWGNKL TTKTMKNSVR SLCNSNVAQG FRIGTDTALP VTYIRSSEAP LEYLGGKTSS
401: ERKILAFFAG SMHGYLRPIL VKLWENKEPD MKIFGPMPRD PKSKKQYREY MKSSRYCICA RGYEVHTPRV VEAIINECVP VIIADNYVPP FFEVLNWEEF
501: AVFVEEKDIP NLRNILLSIP EDRYIGMQAR VKAVQQHFLW HKKPPSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)