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AT5G28850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.939
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28900.1); Has 631 Blast hits to 631 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 303; Fungi - 2; Plants - 142; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G28850EnsemblPlants:AT5G28850.1entrez:833004hmmpanther:PTHR14095
hmmpanther:PTHR14095:SF6Pfam:PF13499Pfscan:PS50222scanprosite:PS00018
Coordinates (TAIR10) chr5:-:10877360..10879416
Molecular Weight (calculated) 38761.80 Da
IEP (calculated) 4.52
GRAVY (calculated) -0.42
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MKASLYSRFY SFLFFFSWQD DFKPLLKELL ATHPGLEFLQ STPEFQERYA ETVTYRIFYY INRSGNGRIT FRELKRGNLI DAMLHADEEE DINKVLRYFS
101: YEHFYVIYCK FWELDTDHDF LIDKENLMRY GNHALTYRIV DRIFSQVARK FTSKVEGKMG YEDFVYFILA EEDKSSVPSL EYWFKCIDLD ANGIITRNEM
201: QFFYEEQLHR MECMAQEAVL FEDILCQMID MIGPENESHI TLHDLKGSKL SGNVFNILFN LNKFMAFETR DPFLIRQERE NPTLTDWDRF AHREYIRLSM
301: EEDVEDASNG SAEVWDDSSL EAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)