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AT2G30910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.915
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin-related protein C1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
actin-related protein C1A (ARPC1A); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1B (TAIR:AT2G31300.1); Has 4172 Blast hits to 3036 proteins in 305 species: Archae - 4; Bacteria - 871; Metazoa - 1539; Fungi - 831; Plants - 451; Viruses - 0; Other Eukaryotes - 476 (source: NCBI BLink).
Protein Annotations
BioGrid:2990eggNOG:ENOG410XNWXeggNOG:KOG1523EMBL:AC004669
EMBL:AK227543EMBL:BT004616EMBL:CP002685EnsemblPlants:AT2G30910
EnsemblPlants:AT2G30910.1EnsemblPlants:AT2G30910.3entrez:817641ExpressionAtlas:O80856
Gene3D:2.130.10.10GeneID:817641Genevisible:O80856GO:GO:0005634
GO:GO:0005737GO:GO:0005885GO:GO:0007015GO:GO:0034314
GO:GO:0051015hmmpanther:PTHR10709HOGENOM:HOG000181752InParanoid:O80856
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017383InterPro:IPR017986
InterPro:IPR024977KEGG:ath:AT2G30910KO:K05757OMA:INEIRVY
PANTHER:PTHR10709PaxDb:O80856Pfam:O80856Pfam:PF12894
Pfscan:PS50082Pfscan:PS50294PhylomeDB:O80856PIR:B84714
PIRSF:PIRSF038093PRIDE:O80856PRO:PR:O80856PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:O80856Proteomes:UP000006548RefSeq:NP_001189645.1
RefSeq:NP_180648.1SMART:SM00320SMR:O80856STRING:3702.AT2G30910.1
SUPFAM:SSF50978TAIR:AT2G30910tair10-symbols:ARPC1tair10-symbols:ARPC1A
UniGene:At.48535UniGene:At.71148UniProt:O80856
Coordinates (TAIR10) chr2:+:13153447..13156869
Molecular Weight (calculated) 41958.30 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.24
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVVDVHRFA ESITCHAWSP DLSMVALCPN NTEVHIYKSL SQDHWERLHV LQKHDQIVSG IDWSSKSNKI VTVSHDRNSY VWSLEGAEWV PTLVILRLNR
101: AALCVQWSPK ENKFAVGSGA KTVCICYYEQ ENNWWVSKLI RKRHESSVTS VAWHPNNVLL ATTSTDGKCR VFSTFIKGVD TKDSKAGSPA ETKFGEQILQ
201: LDLSYSWAFG VKWSPSGNTL AYVGHSSMIY FVDDVGPSPL AQSVAFRDLP LRDVLFISEK MVIGVGYDSN PMVFASDDTG IWSFIRYIGE KKAASSNSSY
301: SSQFSEAFGK FYGSQSKSTT ANDASESRGG VHDNCINSIV SLSKAGSPKV MRFSTSGLDG KVAIWDLENM EQELGNQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)