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AT4G25280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G26667.3); Has 14028 Blast hits to 13841 proteins in 4915 species: Archae - 98; Bacteria - 9051; Metazoa - 1267; Fungi - 476; Plants - 454; Viruses - 0; Other Eukaryotes - 2682 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25280-MONOMEREC:2.7.4.14eggNOG:COG0563eggNOG:KOG3079
EMBL:AL035396EMBL:AL161563EMBL:BT010930EMBL:BT011652
EMBL:CP002687EnsemblPlants:AT4G25280EnsemblPlants:AT4G25280.1entrez:828631
Gene3D:3.40.50.300GeneID:828631Genevisible:Q6NMK6GO:GO:0004127
GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0006207
GO:GO:0006221GO:GO:0009041Gramene:AT4G25280.1gramene_pathway:2.7.4.14
gramene_pathway:PWY-5687HAMAP:MF_00235HAMAP:MF_03172hmmpanther:PTHR23359
HOGENOM:HOG000238771InParanoid:Q6NMK6InterPro:IPR000850InterPro:IPR006266
InterPro:IPR027417KEGG:00230+2.7.4.3KEGG:00240+2.7.4.14KEGG:ath:AT4G25280
KO:K13800OMA:PDIVIFFPANTHER:PTHR23359PaxDb:Q6NMK6
Pfam:PF00406Pfam:Q6NMK6PhylomeDB:Q6NMK6PIR:T05549
PRIDE:Q6NMK6PRINTS:PR00094PRO:PR:Q6NMK6PROSITE:PS00113
ProteinModelPortal:Q6NMK6Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_194258.2
scanprosite:PS00113SMR:Q6NMK6STRING:3702.AT4G25280.1SUPFAM:SSF52540
TAIR:AT4G25280TIGRfam:TIGR01359TIGRFAMs:TIGR01359UniGene:At.22949
UniGene:At.43141unipathway:UPA00588UniProt:Q6NMK6
Coordinates (TAIR10) chr4:-:12939068..12940723
Molecular Weight (calculated) 27836.40 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.33
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MISSSSRSLK LSQAASGLKV GESFATDIIS QEERVSPPKE KAPFITFVLG GPGSGKGTQC EKIVETFGLQ HLSAGDLLRR EIAMHTENGA MILNLIKDGK
101: IVPSEVTVKL IQKELESSDN RKFLIDGFPR TEENRVAFER IIRADPDVVL FFDCPEEEMV KRVLNRNQGR IDDNITTMKK RLKIFNALNR PVIDYYKNKG
201: KLYTINAVGT VDDIFQHVLP IFNSFEQLKE SSHVNPQSHL GSSLVENSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)