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AT2G31300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin-related protein C1B
Curator
Summary (TAIR10)
putative ARP2/3 protein complex subunit p41
Computational
Description (TAIR10)
actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNWXeggNOG:KOG1523EMBL:AC006593EMBL:AF439845
EMBL:BT000567EMBL:CP002685EnsemblPlants:AT2G31300EnsemblPlants:AT2G31300.1
entrez:817687Gene3D:2.130.10.10GeneID:817687Genevisible:Q9SJW6
GO:GO:0005634GO:GO:0005737GO:GO:0005885GO:GO:0007015
GO:GO:0034314GO:GO:0051015Gramene:AT2G31300.1hmmpanther:PTHR10709
HOGENOM:HOG000181752InParanoid:Q9SJW6IntAct:Q9SJW6InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017383InterPro:IPR017986InterPro:IPR024977
KEGG:ath:AT2G31300KO:K05757OMA:LEGGRNQPANTHER:PTHR10709
PaxDb:Q9SJW6Pfam:PF12894Pfam:Q9SJW6Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q9SJW6PIR:A84719PIRSF:PIRSF038093
PRIDE:Q9SJW6PRO:PR:Q9SJW6PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:Q9SJW6Proteomes:UP000006548RefSeq:NP_180688.1SMART:SM00320
SMR:Q9SJW6STRING:3702.AT2G31300.1SUPFAM:SSF50978TAIR:AT2G31300
tair10-symbols:ARPC1tair10-symbols:ARPC1BUniGene:At.48535UniGene:At.71148
UniProt:Q9SJW6
Coordinates (TAIR10) chr2:-:13346313..13349787
Molecular Weight (calculated) 41821.20 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.23
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVVDVHRFA ESITCHAWSP DLSMVALCPN NTEVHIYKSL SQDHWERLHV LQKHDQIVSG IDWSSKSNKI VTVSHDRNSY VWSLEGAEWV PTLVILRLNR
101: AALCVQWSPK ENKFAVGSGA KTVCICYYEQ ENNWWVSKLI RKRHESSVTS VAWHPNNVLL ATTSTDGKCR VFSTFIKGVD TKDSKAGSPA ETKFGEQILQ
201: LDLSYSWAFG VKWSPSGNTL AYVGHSSMIY FVDDVGPSPL AQSVAFRDLP LRDVLFISEK MVIGVGYDSN PMVFAADDTG IWSFIRYIGE KKAASSGSSY
301: SSQFSEAFGK FYGSQSKSTT ANDASDSRGG VHDNSITSIV PLGKGGSPKV MRFSTSGLDG KIAIWDLENM QQELGNQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)