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AT5G28400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28320.1); Has 2580 Blast hits to 2028 proteins in 270 species: Archae - 20; Bacteria - 158; Metazoa - 939; Fungi - 198; Plants - 144; Viruses - 14; Other Eukaryotes - 1107 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFZIeggNOG:ENOG410YCX4EMBL:CP002688EnsemblPlants:AT5G28400
EnsemblPlants:AT5G28400.1entrez:832925GeneID:832925Gramene:AT5G28400.1
hmmpanther:PTHR34962hmmpanther:PTHR34962:SF1InParanoid:F4K740KEGG:ath:AT5G28400
ncoils:CoilPaxDb:F4K740PRIDE:F4K740ProteinModelPortal:F4K740
Proteomes:UP000006548RefSeq:NP_198192.4TAIR:AT5G28400UniGene:At.55060
UniProt:F4K740
Coordinates (TAIR10) chr5:-:10344024..10348234
Molecular Weight (calculated) 109874.00 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.65
Length 973 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKAKRLL KVEIRFSFLV PIRFTNKSDD SEGLKDRVAD DSNLLNELED WVARICKISY SGSFAHRDTV KYLIKMNAWE LVISVFSAWY CGICSNPIFT
101: VYLDSVGNVA KVEVDEDEVL SRRRSGLDDL ESVSSKLVYA KKLAEQMENG EYVTHKDTSL LKFVSSSSSS SSEEEFRFVS SIQNAILRLD LIPKLPAIGR
201: ALLFGYIGLW LLKTVLVYRK SNEVECTELE KEMMRRKMKA WEERDMSEKG TVEVLHKEGL EKPLMSFEKP KFDRNELMSS ISKVKGSEKK LELVNSSHVE
301: LDFDDKIHEI KVMARRAREI EAGIELNEKE KRDVNKETGD SDEDISIQSQ KSLPHDGLTH SVGDDDKDER LGTSTDSENT ELSAFAVPML NGAMVDSGFP
401: NHEMAASDKK KVSNVVPLVP TDGVIQASDV TKDQLSMMKN STGRKSRVIR SVKEAKEFLS RRSGEKELTQ ELSQMAQDSD EIFPKQSDEE RGVARKHKLD
501: VDSQPQKNDY QKLSETGNAV KGSSSNKREE LKSAKSSSGG TEHIEKEEPS GKENWIEKTT MNLSLERETQ EPGTIADIAE LYRSEYNDEL EWMKDEKLRD
601: IVFCVRDNEL AGRDPSHLID AEDKAIFLQS LEKKVEKENE KLSHLHHVYD PLEKIIPRWK GPSLDKNPEF LNNYHEQREA LFSGKAASVS PVKYEEQSSH
701: QELSESASSE NTLTPSSEIT SSQPKIVVEG SDGSVRPGKK SGKEYWQHTK KWSRGFLELY NAETDPEVKA VMRDMGKDLD RWITEDEIKD AADIMEKLPE
801: RNKKFMEKKL NKLKREMELF GPQAVMLSVL FKVYGAMVDS GFPEHEIAAS DKEKVSNLVP LVPTHGIIQS SEAEYCGICS NPIFTVYLDS VGNVAKVEVD
901: EDEVLSRRSG LDDLELVSSR LQKVLEDQIS GLDKLVQLQA KFKNALEEAV LAENGVENNC RDAEISCPDS SAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)