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AT5G28320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.948
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 1861 Blast hits to 1522 proteins in 246 species: Archae - 19; Bacteria - 134; Metazoa - 673; Fungi - 145; Plants - 123; Viruses - 8; Other Eukaryotes - 759 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G28320EnsemblPlants:AT5G28320.1entrez:832916
GeneID:832916Gramene:AT5G28320.1hmmpanther:PTHR34962hmmpanther:PTHR34962:SF1
InParanoid:F4K733KEGG:ath:AT5G28320ncoils:CoilPaxDb:F4K733
PRIDE:F4K733ProteinModelPortal:F4K733Proteomes:UP000006548RefSeq:NP_198184.5
TAIR:AT5G28320UniGene:At.55060UniProt:F4K733
Coordinates (TAIR10) chr5:+:10301936..10306142
Molecular Weight (calculated) 104527.00 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.69
Length 927 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKAKRLL KVEIRFSFLV PIRFTNKSDD SEGLKDRVAH DSNLLNELED WKVEVNEDEI LSRRRRSGLG DLELVMFSQL VKIYLNYHEQ REALFSGKAA
101: SVPPVKYEEQ GIVVDEDEVL SRRRSGLDDL ESVSSKLVYA KKLAEQMENG EYVTHKDTSL LKFVSSSSSS SEEEFRFVSS IQNAILRLDL IPKLPAIGRA
201: SNEVECTELE KEMMRRKMKA WEERDMSEKG TVEVLHKEGL EKPLMSFEKP KFDRNELMSS ISKVKGSEKK LELVNSSHVE LDFDDKIHEI KVMARRAREI
301: EAGIELNEKE KRDVNKETGD SDEDISIQSQ KSLPHDGLTH SEGDDDKDER LGTSTDSENT ELSAFAVPML NGAMVDSGFP NHEMAASDKK KVSNVVPLVP
401: TDGVIQASDV TKDQLSMMKN STGRKSRVIR SVKEAKEFLS RRSGEKELTQ ELSQMAQDSD EIFPKQSDEE RGVARKHKLV DKNKILETGT AVKGSSSNKR
501: EELKSAKSSS GGTEHIEKEE PSGKENWIEK TTMNLSLETQ EPGTIADIAE LYRSEYNDEL EWMKDEKLRD IVFCVRDNEL ADGVSVYDPL EKIIPRWKGP
601: SLDKNPEFLN NYHEQREALF SGKAASVSPV KYEEQSSHQE LSESASSENT LTPSSEITSS QPKIVVEGSD GSVRPGKKSG KEYWQHTKKW SRGFLELYNA
701: ETDPEVKAVM RDMGKDLDRW ITEDEIKDAA DIMEKLPERN KKFMEKKLNK LKREMELFVR AGTYARDADC LFLTEKSLLM LSVLFKVYGA MVDSGFPEHE
801: IAASDKEKVS NLVPLVPTHG IIQSSEAEYC GICSNPIFTV YLDSVGNVAK VEVDEDEVLS RRSGLDDLEL VSSRLQKVLE DQISGSDKLV QLQAKFKNAL
901: EEAVLAENGV ENNCRDAEIS CPDSSAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)